Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq152761 170 3e-37 seq136375 98.7 1e-15 >seq152761 Length=70119229 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||| || |||| || ||||| |||||| Sbjct 22388605 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 22388546 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 22388545 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 22388486 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 22388485 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 22388426 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| ||||||| || || || || |||| Sbjct 22388425 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGATTATCT 22388377 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 22387516 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 22387457 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| |||||| ||||||| |||||||| | || ||||| ||||| || Sbjct 22387456 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 22387397 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 22387396 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 22387337 Query 10208 ttttttACCTG 10218 ||| || |||| Sbjct 22387336 TTTCTTGCCTG 22387326 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || || || ||| || | Sbjct 22386865 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 22386806 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||||||||| || |||||||||||| || | |||||| | ||||| | Sbjct 22386805 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 22386746 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| || ||||||| || || ||||| Sbjct 22386745 GGTGGGCTCTCGATCAAATGTGACCTGGCTGAA 22386713 >seq136375 Length=94492513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || || || ||||| || ||||| || | || | Sbjct 81352370 TCTTGACCATATTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAATACTCTGGAG 81352311 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | |||||| ||||| ||||| || ||||| | || | || | Sbjct 81352310 AACAGATGGGATTCCCTAGGAGGCCCTTGAGAGAAAAGGGGGCCCCAATTTCTATCATAC 81352251 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| || ||| || ||| |||| | | || | | | ||||||| Sbjct 81352250 TCTCCCCAAAGATGGAATTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGAAGAACTCCA 81352191 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||| || || || | || || || || ||||| ||||||| Sbjct 81352190 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 81352134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706154563130000