Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq159875 95.1 1e-14 seq24225 87.8 2e-12 >seq159875 Length=83953389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 |||||||| ||||| | | ||| ||||||||| ||| || ||||| | | | | Sbjct 48385368 TAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACGT 48385427 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| || ||||| ||| || || |||||||| || |||||||| || || |||| Sbjct 48385428 TGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 48385487 Query 21248 ATAAAATCAAATGGATTTTC 21267 ||||||||||| |||||||| Sbjct 48385488 ATAAAATCAAAGGGATTTTC 48385507 >seq24225 Length=140925898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| | Sbjct 133420302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 133420361 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 133420362 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGTGAAATATTCTC 133420421 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 133420422 CATAAAGTCAAATGGATTTTC 133420442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530121425605000