Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24225 141 1e-28 seq113784 125 9e-24 seq159875 87.8 2e-12 >seq24225 Length=140925898 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || | Sbjct 133421814 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 133421873 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 133421874 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 133421933 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 133421934 CCACAACCCGCTCTCC 133421949 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 133424001 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 133424060 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 || || || || |||||||| | || || |||||||| |||||| Sbjct 133424061 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 133424106 >seq113784 Length=115468741 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 60449002 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATG 60448943 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 60448942 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 60448883 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 60448882 CTGTTTCTTATACCATA 60448866 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || ||||||| | Sbjct 60438785 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 60438726 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | ||| || ||||||| Sbjct 60438725 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 60438666 Query 63332 CGGTTCCA 63339 || |||| Sbjct 60438665 AGGCTCCA 60438658 >seq159875 Length=83953389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| Sbjct 48408050 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 48408109 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 48408110 GTACTGGATTGGAAAGATGACAAATC 48408135 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| || || |||||||||||||||||||| |||| || |||| Sbjct 48403598 CCAAATTTTCATTCACAATGCCATCACTGGCTGCAAAAAACGCTAATATGTGAGAGATAA 48403657 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || || | | | || || ||||| | | || ||| || |||| Sbjct 48403658 AATACTTCTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 48403708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620863246945000