Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24225 87.8 2e-12 >seq24225 Length=140925898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| |||||| |||||||||| || ||||| ||||||||| Sbjct 133424008 ATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGCAATTTGG 133424067 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||| || ||||| |||||||| Sbjct 133424068 AAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCTTG 133424108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| ||||| || || Sbjct 133421834 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTGAGCCAGAATATCGACGCG 133421893 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 ||| ||||||||| || || |||||||| || ||||| ||||||| Sbjct 133421894 AAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCCACAA 133421939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554997926605000