Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq166039 104 2e-17 seq36986 104 2e-17 seq1 104 2e-17 seq139997 89.7 4e-13 >seq166039 Length=127282370 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | ||||| || |||| || | || | ||| Sbjct 110596586 AGATGCAGATCTTTGTGAAGCCTCTGATGGGTAAGACTATCACCCTCCAGGTCAAGCCCA 110596527 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||||| |||||||||||||| | ||||| | | Sbjct 110596526 GTGACACCACTGAGAATGTCAAAACCAAAATCCAAGACAAGGAGGGCGTCCCACCTCACC 110596467 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || ||||| ||||||||| | |||||| |||||| |||| | |||| Sbjct 110596466 AGCAGCGTCTAATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACA 110596407 Query 22397 ACATTCAAAAAGAATCCACC 22416 | | || |||||||||||| Sbjct 110596406 ATCTCCAGAAAGAATCCACC 110596387 >seq36986 Length=206538554 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||| | || || || || ||| | |||| || ||| || Sbjct 16385191 AAGATGCAAATTTTTGTGAAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTCGAACCC 16385250 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || ||| ||| || ||||| || ||||| | ||||| || ||| Sbjct 16385251 TCGGATACAATAGAAAGTATGAAAGCCAAGATTCAGGATAAGGAAGAAATTCCTCCTGAT 16385310 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || |||| || ||||| ||||| || | || ||| || || | || || ||| Sbjct 16385311 GAGCAGAGTCTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 16385370 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || ||||| Sbjct 16385371 AACATTCAAAAGGAGTCCAC 16385390 >seq1 Length=240380223 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || |||| ||||| || || |||| Sbjct 75947573 GATGCAGATATTTGTGAAGACAG--ATGGGCAAGACCATCACCCTTGACGTTGAGACCAA 75947516 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| |||| | ||||| ||||| |||||||||||||| || || | || || Sbjct 75947515 TGATACCATGGAGAAGGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCTTGACCA 75947456 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 | ||| | || | || ||||||||| ||||||| ||| ||| |||| || ||||| Sbjct 75947455 GCGGCGTATGATTTGTGTGGGCAAACAGCTAGAGGACAACCACACTCTCTCAGACTACAA 75947396 Query 22398 CATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 75947395 TATCCAGAAAGAGTCCACC 75947377 >seq139997 Length=61081816 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | || || || || |||| || || ||||| Sbjct 9479604 GTCAAAATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 9479545 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || |||||||| || || || Sbjct 9479544 CCCAGTGACACCATCGAAAATGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCA 9479485 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 9479484 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 9479425 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 9479424 TACAACATCCAGAAAGAGTCGACC 9479401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 9479142 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 9479083 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 9479082 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 9479023 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 9479022 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 9478963 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 9478962 ATCCAGAAAGAGTCGACC 9478945 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 9478914 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 9478855 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || || || || || || || || Sbjct 9478854 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 9478795 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 9478794 CAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 9478735 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || ||||| ||||| | ||| | ||| Sbjct 9478734 ATCCAGAAAGAGTCCACTCTCCATCTGGTT 9478705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 9479370 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 9479311 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||| || || || || || || || || Sbjct 9479310 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAG 9479251 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 9479250 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 9479191 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 9479190 ATCCAGAAAGAGTCGACC 9479173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418358981708125