Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq139997 104 2e-17 seq36986 100 2e-16 >seq139997 Length=61081816 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||| || ||||||||||| | ||| || |||||| Sbjct 9478705 AACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 9478764 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || || ||||||| | ||| ||||| ||||| ||||||||||| || Sbjct 9478765 CAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTG 9478824 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||| | |||||| ||| || || |||| ||| | || || Sbjct 9478825 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 9478884 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||| || || || || |||||||| Sbjct 9478885 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 9479174 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9479233 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 9479234 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 9479293 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 9479294 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9479353 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 9479354 TTCACGAAGATCTGCAT 9479370 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 9478946 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9479005 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||| || || || ||||| || Sbjct 9479006 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 9479065 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 9479066 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9479125 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 9479126 TTCACGAAGATCTGCAT 9479142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || | || || | || | || || ||||| || ||||||||||| Sbjct 9479369 ATACCGCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 9479428 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || ||||||| | ||| ||||| || Sbjct 9479429 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 9479488 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || ||||| || | | ||| | |||||| ||| || Sbjct 9479489 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 9479548 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || || ||||| Sbjct 9479549 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 9479598 >seq36986 Length=206538554 Score = 100 bits (110), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | || || || |||||||||||||| || Sbjct 16385417 ACCACCACAAAGTCTCAA--CGAGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGA 16385362 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| |||| ||| | || ||||| Sbjct 16385361 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGACTCTGCTCATCAGGAGG 16385302 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || |||||| ||| | ||| | || || | || |||||| Sbjct 16385301 AATTTCTTCCTTATCCTGAATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGAC 16385242 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | | || || || || || ||||| |||||||| ||||| Sbjct 16385241 CTCAACACTGATGGTCTTTCCTGTAAGGGTTTTCACAAAAATTTGCAT 16385194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418764056161500