Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq139997 125 2e-23 seq1 86.0 1e-11 >seq139997 Length=61081816 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | ||| ||||| ||||| || || || | Sbjct 9478688 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 9478747 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || | ||| Sbjct 9478748 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 9478807 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| ||||| || || ||||| ||||| || | || || | || || Sbjct 9478808 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 9478867 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 9478868 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 9479180 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 9479239 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||| ||||| || || ||||| ||| Sbjct 9479240 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTT 9479299 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 9479300 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 9479359 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 9479360 AAGATCTGCAT 9479370 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 9478952 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 9479011 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || ||||| Sbjct 9479012 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACA 9479068 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 9479069 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 9479128 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 9479129 ACGAAGATCTGCAT 9479142 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || ||||| ||| Sbjct 9479408 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 9479467 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || ||||||||||| || || ||||| Sbjct 9479468 ATGAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACA 9479524 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 9479525 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 9479584 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 9479585 ACGAAGATTTGCATTTTG 9479602 >seq1 Length=240380223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | ||| ||| | ||| |||| ||||| || | | Sbjct 75947384 TCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCTAGCTGTTTGCCCACACAA 75947443 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||| | || | ||||| || || || || |||||||| ||||| || || Sbjct 75947444 ATCATACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACCTTC 75947503 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | | || || || || ||||| ||||| || || | |||| || Sbjct 75947504 TCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATCTG--TCTTCACA 75947561 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 75947562 AATATCTGCAT 75947572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175609429574750