Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq139997 141 9e-29 seq36986 100 3e-16 >seq139997 Length=61081816 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || ||||||||||| | | ||||| | || Sbjct 9478702 AAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 9478761 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||||||||| ||||| || |||||||| || Sbjct 9478762 TTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 9478821 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || |||| || ||||| || | || | ||| Sbjct 9478822 TTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 9478881 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 9478882 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 9479174 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9479233 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || |||||||| ||||| || || ||| Sbjct 9479234 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 9479293 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 9479294 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9479353 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 9479354 TTCACGAAGATCTGCAT 9479370 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || || || | ||||| ||||| || ||||||||||| | Sbjct 9479371 ACCGCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 9479430 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| ||||||||||| ||| | ||||||| ||||||||| || || Sbjct 9479431 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 9479490 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || |||| || ||||| Sbjct 9479491 GATGCCCTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 9479550 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || ||||| ||||||||||| Sbjct 9479551 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 9479601 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 9478946 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9479005 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || || || || || || || || ||| Sbjct 9479006 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 9479065 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 9479066 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9479125 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 9479126 TTCACGAAGATCTGCAT 9479142 >seq36986 Length=206538554 Score = 100 bits (110), Expect = 3e-16 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || | ||||| Sbjct 16385400 ACGAGATGAA--GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 16385343 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || || | ||||| || ||||||||| |||| || || || Sbjct 16385342 AGTTGCTTGCCAGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGA 16385283 Query 64355 ATTTTTTGCTTTACAACCTCC-ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||| || | | | |||||| || || || || ||| | | |||||| Sbjct 16385282 ATCTTG-GCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTT 16385224 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||||| || ||||||||||| || Sbjct 16385223 TCCTGTAAGGGTTTTCACAAAAATTTGCATCTT 16385191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497973332005000