Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq36986 84.2 2e-11 >seq36986 Length=206538554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| | || || ||||| |||||||| || | | | | | ||||| Sbjct 16385401 AACGAGATGAAGTG--GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTC 16385344 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | |||| || ||| | || |||||| ||||||| || Sbjct 16385343 CAGTTGCTTGCCAGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTG 16385284 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| | | ||||||| ||||| ||| || || | | ||||| || Sbjct 16385283 AATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTT 16385224 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || ||||| |||||||||||||| || Sbjct 16385223 TCCTGTAAGGGTTTTCACAAAAATTTGCATCTT 16385191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226301773125