Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq152761 156 6e-33 seq136375 86.0 9e-12 >seq152761 Length=70119229 Score = 156 bits (172), Expect = 6e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||| |||| ||| ||||||| || || || ||||| || ||||| || || Sbjct 22388605 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 22388546 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 22388545 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 22388486 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | || | || | ||| | Sbjct 22388485 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 22388426 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || || || Sbjct 22388425 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGAT 22388382 Score = 147 bits (162), Expect = 3e-30 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 22390357 AACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATCGA 22390298 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||| || |||||||| | Sbjct 22390297 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTC 22390238 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || |||| || ||||||||||| || || || |||| || | Sbjct 22390237 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTAC 22390178 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | || || || ||||| || | | | ||| || || Sbjct 22390177 CATGGTCTCACCAAAGATGGCATCAGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACAG 22390118 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | || ||||| || ||||| ||| | ||||| || |||||||| || Sbjct 22390117 CTCCATGGCATCAATATCACCATAAAGTGCTTCTAACCCCGCAGCCATTTCCTTCTCTCC 22390058 Query 9175 T 9175 | Sbjct 22390057 T 22390057 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | || Sbjct 22387516 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 22387457 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || |||||||| | ||||| || ||||||| || ||||| ||||| || Sbjct 22387456 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 22387397 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 22387396 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 22387340 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || || || |||| ||| ||| Sbjct 22386865 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 22386806 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| || |||||||| || | ||||| Sbjct 22386805 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 22386746 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || || || |||| | ||||||||| Sbjct 22386745 GGTGGGCTCTCGATCAAATGTGACCTGGCT 22386716 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | || || | | | || Sbjct 22389192 CCAGCAATTTGCCTGCTGAATGATTCCACGAACTGGGTAAGCCCATGTTCCAGTAATATA 22389133 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || || | | || |||| | ||| |||| | || ||| Sbjct 22389132 GAGTTGTTGTAGACAAACTGCTGGAAATTGTACTCCTGGTCATCTATTTGCAAGGTGTCA 22389073 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||| Sbjct 22389072 GGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACGGTTTTGGTAT 22389013 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 22389012 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 22388955 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || || ||||| | | || | ||| ||||||||||| || Sbjct 22388954 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATGGTTTCTCC 22388909 >seq136375 Length=94492513 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || || ||||| || ||||| ||| | || || |||||| ||| | | ||| Sbjct 81352347 TCACCACCAAATGTGCTTGGCTTCCAATACTCTGGAGAACAGATGGGATTCCCTAGGAGG 81352288 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || || | ||||| || ||||| | || || || ||||| || ||||||| | ||| Sbjct 81352287 CCCTTGAGAGAAAAGGGGGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAATTTGGA 81352228 Query 9083 CGCGGTTTTTCGACGATGAAGCCA-GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || || | || | |||| | | ||| || | || |||| ||| ||||| || Sbjct 81352227 TGGCACTTCTCCA-GAAGCAGCCCCGGGAAGAACTCCAAGGCATCGATGTCTCCATACAG 81352169 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 | |||||||| || || ||||||||||| ||| |||| Sbjct 81352168 CTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTGCAAG 81352130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721306903675000