Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq130414 86.0 4e-12 seq134266 82.4 5e-11 >seq130414 Length=94101111 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| ||||| |||| || | |||| ||| || || || || || || | | Sbjct 5450842 CCTCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5450783 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| ||||||||| |||| || || | |||||| || | ||| Sbjct 5450782 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5450723 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCA 39670 | ||| |||||||| || || || | || | | ||||| || ||| ||| Sbjct 5450722 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCT--CCA 5450665 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | |||| || || || || ||||| || || || ||||||||||||||| Sbjct 5450664 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 5450615 >seq134266 Length=575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||| |||| |||| || || || || || || || | || ||| || Sbjct 127 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 186 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| ||||||||| |||| || || | |||||| || | ||| | ||| |||||| Sbjct 187 TCTTCCAACTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 246 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAGTAA 39682 || || || || | || | | ||||| || ||| |||| |||| || | Sbjct 247 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCT--CCACCTCCAGGGTGA 304 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || ||||| || || || ||||||||||||||| Sbjct 305 TGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346236591631625