Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq52188 172 2e-37 seq136375 167 9e-36 seq36986 111 6e-19 seq101427 95.1 5e-14 seq1 93.3 2e-13 >seq52188 Length=152998503 Score = 172 bits (190), Expect = 2e-37 Identities = 462/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| || || || || ||||||| ||||| || || || | ||| | || || Sbjct 30988173 GCCATTGGCATCGACCTGGGCACCACCTACTCATGCGTGGGGGTGTTCCAGCACGGTAAG 30988114 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 ||||| || || || || ||||| || || || || || || | || || || Sbjct 30988113 GTAGAGATCATTGCCAACGACCAGGGCAACCGCACCACCCC--CA--GCTATGTGGCCTT 30988058 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTA--AATTCAAATGC 451086 || || | ||| | || | ||| | || || || | | | |||| ||| ||| | Sbjct 30988057 CACTGACACGGAACGGCTCATTGGGGATGCGGCCAAGAACCA-GGTAGCAATG--AATCC 30988001 Query 451087 CAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGT 451146 | | ||||| || | ||| || |||||| | |||||| | | | | ||||| | || Sbjct 30988000 CCAGAACACTGTCTTTGACGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGT 30987941 Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 || ||| | ||| || ||| | | ||| | ||| || ||| |||||| | | Sbjct 30987940 GCAGGCAGATATGAAACACTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGT 30987881 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 ||| || ||||| || | ||| |||| |||||| ||||| || |||||||| Sbjct 30987880 AACAGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGT 30987821 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 || || || ||||| || || || || | | | || || || || |||| || Sbjct 30987820 ACTGACAAAGATGAAGGAGACTGCTGAGGCCTTTTTGGGCCACCCTGTCACCAATGCTGT 30987761 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 || ||||| || ||||||||||||||| | || || ||||| || || |||||||| Sbjct 30987760 GATAACTGTGCCAGCTTATTTCAATGATTCTCAGCGTCAAGCCACCAAGGATGCAGGTGT 30987701 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||| ||| | ||||| || ||||||| |||||||| ||||| ||||| | ||||| Sbjct 30987700 GATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGCCATTGCATA 30987641 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| ||| ||| | || | ||| | || | || | ||||| | ||||| Sbjct 30987640 TGGCTTAGATAAAGC---AGGTCAGGGAGAGCGACATGTCTTGATCTTTGACCTGGGTGG 30987584 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 |||||| |||| || | || | || || ||||| | |||||||||||||| || Sbjct 30987583 AGGAACATTTGATGTGTCCATCCTGACGATAGATGATGGAATCTTTGAAGTAAAGGCCAC 30987524 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 30987523 AGCTGGGGACACCCACCTTGGTGGAGAGGACTTTGACAA 30987485 >seq136375 Length=94492513 Score = 167 bits (184), Expect = 9e-36 Identities = 1019/1606 (63%), Gaps = 57/1606 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTG---TTTACCAAAATGGA 450970 ||| |||| |||| |||||| ||||||| || ||||| |||| | || || | ||| Sbjct 1869679 GCAGTTGGCATTGGTCTTGGCACCACCTACTCTTGTGTGGGTGCCTTCTAGCACA--GGA 1869736 Query 450971 AATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTT 451030 || || ||||| || || || || || ||| ||||| || || | ||| ||| Sbjct 1869737 AA-GTGGAAATAATTGCCAACGATCAGGGAAACCGAACCACCCCAAGTTACGTAGCCTTT 1869795 Query 451031 ACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCA 451088 || ||| | ||| || | | || | ||||| || ||||| ||| || ||| Sbjct 1869796 ACTGATACTGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCAATG--AACCCCA 1869853 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||||||| | |||||| ||||| | ||||| || | ||| |||| | ||| | Sbjct 1869854 CCAACACAGTTTTTGATGCCAAACGCCTGATTGGGTGTGGATTTGACGATGCTGTTGTCC 1869913 Query 451149 AAAAAGAGAAAAAATTCTTTTC--TTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 || || | || || | | ||| || || ||| | || | |||| | | Sbjct 1869914 AATCTGATATGAAGCACTGGCCCCTCATGGTG--GTGAATGATGCTGGCAGGCCCAAGGT 1869971 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 |||||| | || || || || || |||| ||| ||| || || | || |||||||| Sbjct 1869972 CCAAGTAGAATACAAGGGAGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGT 1870031 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 | | || || || || |||| ||||| || |||| | ||||| |||| | Sbjct 1870032 TTTGACAAAGATAAAGGAAATCGCAGAGGCTTACCTTGGGAAGACCGTTACCAATGCTAT 1870091 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | | || || || || ||||| || |||| || || || || || |||||||| ||| Sbjct 1870092 AGTCACAGTACCTGCCTATTTTAACAATGCTCAGCGTCAGGCTACCAAAGATGCTGGAAC 1870151 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC------CTACAGCAGCTGCTCT 451440 |||||||||| | ||||| ||| |||| || || | || | || || |||||| | Sbjct 1870152 TATTGCTGGTCTTAATGTACTTTGAATCATCAAAGTACAGCAGCCAACTGCTGCTGCTAT 1870211 Query 451441 AGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTT 451500 | ||||| ||| ||| || | || ||| ||| | | | ||||| || Sbjct 1870212 TGGTTATGGCTTAGAGAAA---AAGGTTGGAGCCAAAAGGAATGTGCTGATCTTTGACTT 1870268 Query 451501 TGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || || || ||| |||| || | || | || ||||||||| | ||||| || || Sbjct 1870269 GGGAGGTGGCACTTTTGATGTGTCAATCCTCACTATCGAAGATGGGATCTTTGAGGTCAA 1870328 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATG 451620 || | ||| || || || |||| || ||||| |||| || ||| || | Sbjct 1870329 AGCTGC---TGGAGACACCCACTTAGGTGGAGAAGACTTTGACAACCAAATGGTAAACCA 1870385 Query 451621 GTTGAAAACTGATGTTCAA-CGAAAACTAAAAGTAG-ATATTTCTACTAACCAAAAAGCA 451678 || | | || |||||| || |||| | ||| || | || | ||| | || ||| Sbjct 1870386 TTTTATTGCAGA-GTTCAAGCGCAAAC-ATAAGAAGGACATCAGTGAGAACAAGAAGGCA 1870443 Query 451679 CTTAGACGTCTTAAAACATCA-GCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAAC 451737 | | || || || || ||| | | || || |||||| ||| || | | Sbjct 1870444 GTCCGTCGCCTCTGTACCTCTTGCA-AGCATGCCAAGCATACACTTTCTTC--CAGCACC 1870500 Query 451738 TA--CTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACC 451795 || | ||||| | |||| | | || ||| ||||| | | ||| || |||| Sbjct 1870501 TAGGCCAGTATTGAGATTGGTTCTCTATATGAAGGAATCAACTTCTATACCTCTATTACT 1870560 Query 451796 CGTGCTAAATTTGAA----TCAATTTGTTCCAGTATTTTTGCACGGGTAATGAAACCTGT 451851 ||||| |||||| | ||| || || | | |||| || | ||||| Sbjct 1870561 CGTGCCCGGTTTGAAGAATTAAATACTGACCTGTTCTGTGGCACCC----TGGACCCTGT 1870616 Query 451852 TGATCAAGTATTACATGATTCTAAAATTAGTAAAGA-TAAAATTGATGAAATTGTGCTTG 451910 || ||| | || ||| | || | || ||| | | || |||| ||||| | | Sbjct 1870617 AGAGAAAGCTCTTCAGGATGCCAAGCT-AGACAAGTCTCAGATCCATGATATTGTCTTGG 1870675 Query 451911 TAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGA-GGA 451969 | || ||||||||||| || || || ||||| || | | | |||| | || Sbjct 1870676 TGGGTGGTTCTACACGTATCCCCAAGATTCA-GAAACTTCTACAAGACTTTTTCAATGGG 1870734 Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 || |||| |||||||| | || |||||||||||||| || || ||||| || || || Sbjct 1870735 AAGGAACTGAGTAAGAGCATCAACCCTGATGAAGCTGTCGCTTACGGTGCAGCTGTCCAG 1870794 Query 452030 GCAGCTATTCTAACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088 ||||| || || | || || || |||||| |||| | ||| | | || || Sbjct 1870795 GCAGCCATCCTTCCTGGAGACAAAT-CTGAAAATGCTCAAGATTTGCTGCTGTTGGAGGT 1870853 Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148 || || || |||||||| ||||||| ||||||||| | |||||| | | || || | Sbjct 1870854 CACTCCCCTTTCTCTTGGCATTGAAACTGCTGGTGGAGTCATGACTGTTCTCATCAAGCA 1870913 Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208 || | |||||| |||| ||| ||||| || | ||| ||| ||||| || Sbjct 1870914 CAATTCTACCATTCCTACTAAACAGACCCAAACCTTCACTACCTACTCTGACAACCAGCC 1870973 Query 452209 AGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACT 452268 |||||| ||||| || | |||||| || ||||| ||||| ||||| || | | Sbjct 1870974 TGGTGTACTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTATT 1871033 Query 452269 AGGAGAATTTACTCTTTCAAACAT---TCCTCCTATGCCAAGGGGAACTCCTCAAATTGA 452325 || | ||| | || ||| |||| | ||| || | |||||| ||||| Sbjct 1871034 TGGCAAGTTTGAACCCACAGGCATACATCCTGCCCCCCCATGGCG--TTCCTCAGATTGA 1871091 Query 452326 AATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATC 452385 | |||| |||| ||||||| ||||| ||||| ||||| ||| || || || | Sbjct 1871092 GGTCACCTTTGATATTGATGCTAATGGCATTCTCAATGTCTCTGCTGTGGATAAGAGGAC 1871151 Query 452386 TGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATA 452444 |||||| |||| || || || || || || | ||| || || || ||||| | Sbjct 1871152 AGGAAAA-GAGAATAAGATCACCATCACAAACAACAAAGGTCGCTTGAGCAAGGAAGACA 1871210 Query 452445 TTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 |||| ||||| | ||||| || || | ||| | ||| ||||| Sbjct 1871211 TTGAGCTCATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGA 1871256 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 84124370 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 84124311 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | |||| || ||||| || Sbjct 84124310 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGAATCATCAATGAGCC 84124258 >seq36986 Length=206538554 Score = 111 bits (122), Expect = 6e-19 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || | | |||| || ||| | || Sbjct 16385194 ATGCAAATTTTTGTGAAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTCGAACCCTCG 16385253 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| ||| || ||||| |||||||||| ||||||||||||| | Sbjct 16385254 GATACAATAGAAAGTATGAAAGCCAAGATTCAGGATAAGGAAGAAATTCCTCCTGATGAG 16385313 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 16385314 CAGAGTCTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 16385373 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | ||||||| Sbjct 16385374 ATTCAAAAGGAGTC--CACTTCA 16385394 >seq101427 Length=159252932 Score = 95.1 bits (104), Expect = 5e-14 Identities = 233/353 (66%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||||| | || | | || || |||| ||| ||| || || | || ||||||||| Sbjct 39046631 CAAGTAGAATACGAGGAAGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCTTCTATGGTT 39046572 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||||| |||| |||| || |||| | ||||| |||| ||| Sbjct 39046571 TTGACAAAGATGAAGGAAATCACAGAGGCTTACCTTGGGAAGACTGTTACCAATGCTGTA 39046512 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || | || || ||||| || | | || | | || || ||| |||| ||| || Sbjct 39046511 GTCACAGCACCTGCCTATTTTAACAAGTCTCAGCATTAGGCTACCAAACATGCTGGAAAT 39046452 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | ||||| || ||||| || | ||| || || || |||||| | || ||| Sbjct 39046451 ATTGCTGGTCTTAATGTACTACGAATCATCAGTGAGCCAACTGCTGCTGCTATTGCTTAT 39046392 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| | || |||| ||| | || | ||||| || || || Sbjct 39046391 GGCTTAGACAA---AAAGGTTGGAGCTGAAAGGAATGTGTTGATCTTTGACTTGGGAGGT 39046335 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || ||| |||| || | || | |||||||||||| | ||||| || || Sbjct 39046334 GGCACTTTTGATGTGTCAATCCTCACTATTGAAGATGGGATCTTTGAGGTCAA 39046282 >seq1 Length=240380223 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| || || || |||| |||| || ||||| | |||||||||||| Sbjct 115109384 GCCACTAAAGATGCTGGCCAGATATCTGGACTAAACGTGCTTCGGGTAATTAATGAACCT 115109325 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 115109324 ACAGCCGCTGCTCTGGCTTATGGTCTAGACAAATCAGAAGA 115109284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1968943769653500