Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq152761 93.3 6e-14 >seq152761 Length=70119229 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/226 (70%), Gaps = 16/226 (7%) Strand=Plus/Minus Query 197419 ACAGATATTGAGAACGTGGCTTGGAACGG-CCCTAAAA-----TCGCTTTAGCATTTGCC 197472 ||||| |||||| |||| || |||| || ||| |||| | ||||||||| | | Sbjct 64759807 ACAGAGATTGAGCACGTCGCCTGGAGTGGTCCCCAAAAGGCTCTTGCTTTAGCAGT---C 64759751 Query 197473 AATCCTAAAGAC--GTTACCATAATGGATAAAAGCTACCAGGGTCGTGTCAACATTAGCC 197530 | | ||| || |||| ||| ||||| |||||||||||| || | ||||| ||| Sbjct 64759750 A--CAGAAACACAAGTTATCATTATGGACAAAAGCTACCAGAACCGACTGAACATCAGC- 64759694 Query 197531 AAACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGG 197590 |||||||| |||| || || |||||||| |||| || || || || || || | Sbjct 64759693 --TGGAACTACTCCTTGTCTATCAGCAACCTGACTTTGAAAGACGCAGGATCCTACAAAG 64759636 Query 197591 CCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATT 197636 |||| || ||| || ||||| ||||||||| | |||||||| Sbjct 64759635 CCCAGATAAACCGCAAGAATTCTGAAGTCACCATTGATGAGGAATT 64759590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699839759030000