Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq139997 114 1e-20 seq166039 86.0 5e-12 >seq139997 Length=61081816 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 9479168 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 9479227 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || ||||||||||||||||| || || Sbjct 9479228 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTG 9479287 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || || |||| || |||||||| Sbjct 9479288 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 9479347 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 9479348 AGGGTCTTCACGAAGATCTGCAT 9479370 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | ||| || || || ||||| || || |||||||| | Sbjct 9478688 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 9478747 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| || ||||| || | | ||| || || || || Sbjct 9478748 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 9478807 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||| || || || ||| |||| | |||||| | ||||| Sbjct 9478808 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 9478867 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || |||||||| Sbjct 9478868 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 >seq166039 Length=127282370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || | ||||| || ||||| || | ||| | |||| |||| ||| Sbjct 52665480 ATGAAGAGTGGACTACTTTTGAATGTTGTAGTC----AAAGTACATCCATCTTCCAGTTG 52665535 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || | || |||| | ||| ||||| | |||| |||||||||||||| || || Sbjct 52665536 CTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCTTTATCTTGGATCTT 52665595 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| |||||| || || || | ||| | |||||||||| | || || | Sbjct 52665596 GGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTGATAATCTTCCCCAT 52665655 Query 101446 TAAAGTTTTTACAAATATCTGCA 101468 |||||||| | | ||||||| Sbjct 52665656 AAAAGTTTTCATGGAAATCTGCA 52665678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394985866792125