Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq14907 161 2e-34 seq20322 136 7e-27 seq113784 91.5 3e-13 seq86921 84.2 4e-11 >seq14907 Length=168638799 Score = 161 bits (178), Expect = 2e-34 Identities = 184/245 (75%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| |||||| || |||||||| | Sbjct 9112526 AGCAGCTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTAAGCTGGGCCACTT 9112469 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | || || | ||||| || ||||| || | |||||| ||||| Sbjct 9112468 GTTCCCGAAGGAGCCCAGCAGTGCTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCA 9112409 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 9112408 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 9112349 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| | Sbjct 9112348 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGG 9112289 Query 241623 GAGAC 241627 | ||| Sbjct 9112288 GGGAC 9112284 >seq20322 Length=558 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 404 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 345 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||| ||||||||||| || |||| |||||| ||||| Sbjct 344 TCCGTGTTCTGGCTCTTGAGCGTCTTGACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 285 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| || | ||| || | |||||| || || | ||| || |||||||| Sbjct 284 TTGCGCTTGCGGCACTTAGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTA 225 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 224 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 192 >seq113784 Length=115468741 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 60440337 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 60440278 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 60440277 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 60440219 Query 213647 GGAC 213650 ||| Sbjct 60440218 AGAC 60440215 >seq86921 Length=222198629 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 47997980 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 47998039 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| | ||||| |||||||||| Sbjct 47998040 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCTCTCCTGCGACTCCATGTCG 47998099 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 47998100 ATGGGGGAC 47998108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928416531680000