Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq136375 365 5e-96 seq101427 199 5e-46 seq52188 111 2e-19 >seq136375 Length=94492513 Score = 365 bits (404), Expect = 5e-96 Identities = 681/991 (69%), Gaps = 13/991 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||| ||| |||| ||| || | ||||| ||| ||| || || Sbjct 18195116 TGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTG 18195057 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || |||| ||||||| || ||| || | ||||| || Sbjct 18195056 TTGGCAAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCACCTGCTCCGAAGACA 18195000 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || ||||| | ||| || ||| |||| |||||||| | || || || | |||||| Sbjct 18194999 CACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCTTGGAGACGTCA 18194940 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| || ||||| || ||||| |||||||| || |||| || Sbjct 18194939 CCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAGACATGTCATAC 18194880 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | |||| | | || || || |||| || | ||| | |||||||| || Sbjct 18194879 TTCTGGCTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATAGTGGCCCAGAGA 18194820 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTC 160405 | || || || ||||| ||||| || | ||| ||||| |||| ||| | | || Sbjct 18194819 TACTCATCCGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGGATCTTTTCATTC 18194760 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | || || | || || || | || ||||| || || ||||| ||||| | Sbjct 18194759 TCT-AGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCACTGCCTGAGAACAG 18194701 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 || | | ||| || ||| ||| |||| || ||||| | || | ||| || | Sbjct 18194700 GGGCGTTTCAAGAGGAGG-GTGCATTTTGTCCGTCCCTGTGTTGGTCAGCTTTCCATTAA 18194642 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | | |||| |||||||| | | || | | |||||| | || | ||||| Sbjct 18194641 CAACTGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCGGACTCTA 18194582 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| |||| | |||||| |||| | ||| ||||| ||||| || || | | Sbjct 18194581 GGTTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAGGTTGGTTTTAATAG 18194522 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || | ||||| | ||||||| |||| |||| | ||| |||| || |||| Sbjct 18194521 GGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCCGCACTCATCCTGTAGAGGT 18194462 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 | |||||| || | || |||||||| || ||||| || || ||||| ||| |||| | Sbjct 18194461 CTTGCATGCAGTTGAGGTCGGCCTGCACCCGACTCCAAGAGGCATACACCACGCTCTCCA 18194402 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC---CAGAA 160821 | | ||||||||| ||||||||| ||| || || |||| |||| |||||| || || Sbjct 18194401 GCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCATCACCGCGGCCAAAA 18194342 Query 160822 AGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | ||| | | | |||| ||||||||| | ||| || || ||||||||| |||| Sbjct 18194341 AGGA-ATCCT--CGGATTTTCTGTCCACGTGAATGCAGTAGAGATTCTGAGGCATATAGA 18194285 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 ||||||| || | ||| || | ||| || || || ||||| | ||| ||||| || || | Sbjct 18194284 TGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATAGAATACGCAA 18194225 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | |||||||| | ||| || ||| |||| | | | || || ||| |||||| | Sbjct 18194224 TGGGAAACTCCGCCTCTTCTTTACTAAGGGGCTCTACGATATATTTGCGCCTCTTGACGA 18194165 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| ||||| | |||||||| ||||| Sbjct 18194164 AAGAATTGCAATCTCTGGTCATGTTTATATA 18194134 >seq101427 Length=159252932 Score = 199 bits (220), Expect = 5e-46 Identities = 237/320 (74%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | |||||| || ||||| || || || || || |||||||||||| || Sbjct 59046732 AGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGCACTTG 59046673 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| ||||||| |||||||||||| || || | |||||||| ||| || Sbjct 59046672 TAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGAGTTCC 59046613 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || ||||| | ||| || |||||||| || ||||||| | Sbjct 59046612 AGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTTG 59046553 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| ||||| || |||||||| || || |||| Sbjct 59046552 CTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAATCAAG 59046493 Query 168393 ACCTCTTTATCGG---TCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || | ||| | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 59046492 ACTTCCT---CGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCTCT 59046436 Query 168450 CGCTCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 59046435 TCTTCATCTTGGGTCACCAC 59046416 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 167903 AGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATC 167962 ||| |||| ||||| |||| ||| || ||||| || || || || ||||| || || Sbjct 59049571 AGTCCCCAGGTGTAGCACCTGGCAGATTACCTCC---TTCCCCACCTGGCTCTTGGGGTC 59049515 Query 167963 TTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGT 168022 ||| || || | | || || ||| || || |||||| | ||| | | | | || Sbjct 59049514 TTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATTGGGGTGTGAGAGAATCTCAGT 59049455 Query 168023 GCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGT 168082 ||||| ||||||||||| || | ||||||||| | || ||||| || || || || | Sbjct 59049454 ACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGAGATCACAGGGGCTGGGCGGGCATT 59049395 Query 168083 AGCAGAGCAGGTAATATTTA 168102 |||||||| || ||||||| Sbjct 59049394 GGCAGAGCAAGTGATATTTA 59049375 >seq52188 Length=152998503 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | || |||| || |||| |||||| | ||||| || |||| | || | Sbjct 86962081 AGATATTTTGCGAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 86962022 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || |||||||||| || || || || | ||| | || || | || ||| Sbjct 86962021 GGAATATAATTCTCATAATTTTCCCTAGACGGCCCCAGAACAACAGGGACAGAACCGGCT 86961962 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 86961961 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAC 86961902 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 86961901 AGATAAAATTTGCA 86961888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575288221395000