Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq173790 87.8 7e-13 >seq173790 Length=2135 Score = 87.8 bits (96), Expect = 7e-13 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 43941 GCGCTTGCGGATACCGATGATCTTGCGGATGA-CTTTGACATCGTATCCACGGCCTTTGG 43999 ||||||||||| | | |||| | | || || ||| | | |||| || | ||| || | Sbjct 1110 GCGCTTGCGGAGCGCCACGATCATCCTGAGGATCTTCGGC-GCGTAGCCCCTGCCCTTCG 1168 Query 44000 CCTCAGCCATAATCTCTTTCTGGCCTTCAACGATGTCTTTCTTCTCAACCTCAAGCCGCT 44059 | || ||||| | ||| ||||| | |||| || |||||||| |||| ||| ||| Sbjct 1169 CTTCGGCCATCAGCTCCTTCTGCTGGCCGCCGATCTCCTTCTTCTCGGCCTCGAGCTGCT 1228 Query 44060 CATAGCGTTCGATGAACTGGCGCAGTTCCTCGCCCGCTAC 44099 | ||||||||||||||||| ||||| || ||| |||| || Sbjct 1229 CGTAGCGTTCGATGAACTGCCGCAGCTCGTCGGCCGCGAC 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181565137830000