Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq36986 93.3 8e-14 seq166039 87.8 4e-12 seq139997 87.8 4e-12 >seq36986 Length=206538554 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 192338 AAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTA 192396 |||| | ||| ||| || || || || ||||| || || ||| |||| |||| ||| || Sbjct 16385392 AAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTG 16385334 Query 192397 CCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 ||||||||||| | ||||| | |||||| || ||| |||| ||||| || || || | Sbjct 16385333 CCAGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGAATCTTGGCT 16385274 Query 192457 TTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 || | | | ||| | ||| || | ||| || || | | | ||||| || || || | Sbjct 16385273 TTCATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGG 16385214 Query 192517 GTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || ||||| || Sbjct 16385213 GTTTTCACAAAAATTTGCATCTT 16385191 >seq166039 Length=127282370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || |||| ||||| | |||||| |||||| | || | |||||||| Sbjct 52665523 CATCTTCCAGTTGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCTT 52665582 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || |||||||| ||| | |||||| | ||| | || ||||| | Sbjct 52665583 TATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTGA 52665642 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 | | || || | || ||||| || | ||||||| Sbjct 52665643 TAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCA 52665678 >seq139997 Length=61081816 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | ||| | ||| | |||||| ||| || |||||||| Sbjct 9478688 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 9478747 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 9478748 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 9478807 Query 192430 ATTCCTTCTTTATCTTGTATTTT 192452 || |||||||||||||| || || Sbjct 9478808 ATGCCTTCTTTATCTTGGATCTT 9478830 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | || | |||||| ||| || |||||| Sbjct 9479141 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 9479200 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 9479201 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 9479260 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||||||||| || || Sbjct 9479261 GGGATGCCTTCTTTATCTTGGATCTT 9479286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981104271918750