Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq166039 86.0 1e-11 seq1 84.2 4e-11 >seq166039 Length=127282370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT-CTTTAGAAATAT 171891 |||| || || |||| | || || || | | ||| | ||| | || |||| ||| | | Sbjct 52665447 TTTCTTAGTAACACCACGAAATCTCAACATAAGATGAAGAGTGGACTACTTTTGAA-TGT 52665505 Query 171892 TATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTT 171951 | || || |||| | | | || |||| ||| || |||| || || | |||||| | Sbjct 52665506 TGTAGTC----AAAGTACATCCATCTTCCAGTTGCTTGCCAGTGAAGATCAGTCTCTGAT 52665561 Query 171952 GGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTG 172011 | ||| | || | ||||||||||||||| || || |||||||| ||| ||||||| Sbjct 52665562 GATCAAGAGGAAGTCCTTCTTTATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCTG 52665621 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 | | ||| | || ||||| || | || || | || ||||| ||| | ||||||| Sbjct 52665622 AGGGTTCAATCTCAAGAGTGATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCA 52665678 >seq1 Length=240380223 Score = 84.2 bits (92), Expect = 4e-11 Identities = 161/225 (72%), Gaps = 27/225 (12%) Strand=Plus/Minus Query 126965 AATAATGAATATTGATAAATGTAT-Taatgaatatg-ataaacctatatattatacttac 127022 ||| || |||||| |||||| ||| |||| ||||| ||||| ||||||||| || Sbjct 32203059 AATTATAAATATT-ATAAATATATATAATTAATATATATAAATATATATATTAATTATA- 32203002 Query 127023 tatgatttatatagaaatatgaatgatataatttacaattatgataataATATTGTTAAA 127082 ||| ||||||||| ||| ||| |||||||||| | ||| | | |||||| |||| Sbjct 32203001 TATAATTTATATA----TATAAAT-ATATAATTTATA--TATAA-ATTAATATATATAAA 32202950 Query 127083 ACATATATGGATATTTTATTATCTCAAATACAATTTTTATCAACTATAAATATTaaaaaa 127142 ||||| |||| ||| ||| | ||||| | | | ||| | ||||||||||| || | Sbjct 32202949 ---TATAT--ATATATTAATATAT-AAATATATTATATATAA--TATAAATATTATAATA 32202898 Query 127143 aTATGTAATACATATTCGAATAGAATGGTACATATATTATATATA 127187 || ||||| | ||| ||| || |||||||||||||| Sbjct 32202897 TAATATAATATA-------ATATAATTATATATATATTATATATA 32202860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902108037225000