Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq139997 107 6e-18 seq77426 89.7 2e-12 >seq139997 Length=61081816 Score = 107 bits (118), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || ||| || ||||| || || || || || | ||||| ||||| ||||| Sbjct 2360734 ACCAGTCTCAGCTGTCTTGACAGCGGTGTCGATGAGCCCCTCGCGACCCCCCATGGCATG 2360675 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| ||||| || || Sbjct 2360674 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCTCGGC 2360616 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||||||| | |||| |||| | ||||| |||||||||| || || ||||| | | Sbjct 2360615 TCTCGGGCCCGTAGTCGTCCTTGATGAAGTGGGGCAGGGTCCGGTGCTTGAAGCCGAACG 2360556 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 2360555 GGATCCGCTTGCCCTCTACGTTCTGCTGCCC 2360525 >seq77426 Length=142431058 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || |||||| | ||| | | ||| ||||| || |||||| Sbjct 134339935 GCTTCACCTGAGGACATTAAGAAGTCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 134339876 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 134339875 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 134339816 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 ||| | || ||||||| |||||| Sbjct 134339815 GAAGTATTATCAAATAATGAAAAA 134339792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466770817939625