Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq136390 89.7 8e-13 >seq136390 Length=11866 Score = 89.7 bits (98), Expect = 8e-13 Identities = 229/325 (70%), Gaps = 38/325 (12%) Strand=Plus/Minus Query 107261 TAATAATGTTATGTCtatatattgatat-atgtaaatt--tttatctaatattagtattt 107317 |||| || |||| | |||||| |||| || || ||| | ||| |||||| || | Sbjct 769 TAATTATATTATAT---TATATT-ATATTATATATATTAGTATATATAATATATATAATA 714 Query 107318 cattataattaaatatatttttgtataatattggctgtaatttattaaatattaa-atta 107376 |||||| | ||||||| | ||||||| ||||||| |||| ||||||| |||| Sbjct 713 TATTATATATTAATATATAATATAATAATAT---CTGTAAT--ATTATATATTAATATTA 659 Query 107377 tcatc-tatttCTAAGGTATCATCTTTGatataataaattatataaagtattaattcatt 107435 || ||| | ||| ||| || || ||||| || |||| ||| | |||||||| || Sbjct 658 ATATAATATAT-TAA--TATTATATTA-ATATATTATATTA-ATATAATATTAATTAAT- 605 Query 107436 tctcattcgaatattattaataatatttaaatatatagattctggcatat-aatct-tta 107493 ||| |||||||||| || || | | |||||| ||| | |||| ||| | ||| Sbjct 604 ----ATT--AATATTATTA-TATTAAT--ATTATATATATTAT---ATATTAATATATTA 557 Query 107494 tgtgataatatacatctaatatatgatataGATGGATTTTCATTTAGAAATTTATTTATT 107553 | | ||| ||| || |||||||| ||||| || || || || || ||| | ||| | Sbjct 556 TATTATATAATATAT-TAATATATAATATA-AT--ATATTAATATATTAATACAATTACT 501 Query 107554 TTATAATATATTGAATAATCTATAA 107578 ||||||||||| ||||||||||| Sbjct 500 GTATAATATATTATATAATCTATAA 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783536427715000