Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq130414 122 8e-23 >seq130414 Length=94101111 Score = 122 bits (134), Expect = 8e-23 Identities = 502/776 (65%), Gaps = 87/776 (11%) Strand=Plus/Minus Query 1040 GTCTAGTTGTTCTGGTTTCTTGTAAATATGCCCACAGCTCTAGCTTCTGGTCTGAAAAAG 1099 |||||||||||| | |||| | | || |||| ||||||| ||||| |||| Sbjct 7578780 GTCTAGTTGTTCCCATCTCTTCCTGGTGTATCCGCAGCCCTAGCTTGGGGTCT--AAAAT 7578723 Query 1100 AGTAGGTTTCTCTTGAGAGTTAA-GGAAGGCATTTTAAAGAAAAGGCTTAGaaaaaaaaT 1158 |||||| ||| | | | || ||||||||||||||||||| ||| |||| || |||| Sbjct 7578722 AGTAGGCCTCTTCTAGGGGCAAATGGAAGGCATTTTAAAGAAATGGCCTAGAGAAGAAAT 7578663 Query 1159 CTGGT-GGGCACTTACATATTCTTCCATAAGTT--TTGAAAATGAGAACTGTAGTTCTGT 1215 ||| |||||||||| || |||| || |||| || | ||| | | ||| ||| Sbjct 7578662 CTGTAAGGGCACTTACGTAGTCTTGCAAAAGTCCCTTAGACATGGG--CCGTAATTCCAA 7578605 Query 1216 GATTACAGCTGATTGTATGTCCCGTGGT---AGTGGATGGCCG---------TGGGAGGA 1263 ||||| | | | | ||| | |||| ||| ||||| || ||||||| Sbjct 7578604 GATTAT---TTTTCGGACGTCACTTGGTTGTAGTCGATGGGCGGGTGCCATATGGGAGGG 7578548 Query 1264 GAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGCAAGCCCTGAAGATTTTGTAAAAAT 1323 ||||||| | | ||||||||||| |||||||||| || | | | || | ||| Sbjct 7578547 CAGCAAGGTTTCCATGCAGCAGAGCAGAAACAGGGCAAACCTGGCGGGTCCTGGAGAAAG 7578488 Query 1324 AGAGTAATGC------CCACACACCCCCACCTGCCCCATACCTTAACCTGCCCAAGCTTT 1377 | | | |||| |||| || || ||||| | || ||| || | Sbjct 7578487 AAAATGATGCTGTGGGCCACGTGGCCAGAC--GCCCCCTGCCCA------CCCCAGTTGC 7578436 Query 1378 CACCACCGAAGCTGTGCCGGA-------CTG----AGCCCCATCCAGTCTTTCTCTTTGT 1426 ||||| ||||| || || ||| |||||| ||||| | | ||| | | Sbjct 7578435 AACCACTGAAGCCGTTGTTGAGCAACCACTGGCCAAGCCCC-TCCAGAGTCT-TCTCTAT 7578378 Query 1427 CTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGACCTATCGATACCTGAG 1486 | | | || |||| | | || | | || ||| ||| | | |||||| | Sbjct 7578377 CCAACGGGACAAGACCACGCTCATGA--AACA--GGCATCAGGGCACAGTAGTACCTGCG 7578322 Query 1487 GGGGATACTATAGCAGGAGAGAGCG---AGGCCGCCGCTTTGGCAACAGCTGCTAGAGTG 1543 |||| | || || |||||||| ||| | | ||| |||||||||| || ||| Sbjct 7578321 TGGGAGAGCATGGC--GAGAGAGCACACAGGGC-CTGCTCCGGCAACAGCTTCTGGAGCT 7578265 Query 1544 AGATGTGCTCGCTAT--ACTTTTAGGGAACTGTATATAAAGGGCTAGTTGTAAGG---AG 1598 |||||||||||| || ||| | | || |||||||||||| |||||| ||| | Sbjct 7578264 AGATGTGCTCGCCATGGACTCTGGGAGA----TATATAAAGGGCCAGTTGTGAGGGAAAA 7578209 Query 1599 GAGCACTAAAAGTACCGCCCACGGTAAAGTCATTACTCAG-----------AAAACA-TT 1646 |||| | || || ||||||| || ||| ||||| ||||| |||||| || Sbjct 7578208 GAGCGATCAACGTCCCGCCCATGGCAAAATCATTGCTCAGCTTTTCTCCAGAAAACACTT 7578149 Query 1647 TCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAAATG---AAGTTAC 1703 |||| || |||| || ||| | ||||| | || |||||||||| | ||||| Sbjct 7578148 TCAATATTCTGCCCCACGAGGCTGGGTGAAAGCGGGACTGGAAGGAAATGCTGAGGTTAC 7578089 Query 1704 CCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG---GCACCCACA 1756 ||| ||| ||||||||||| |||| || | || | |||||| || |||| |||| Sbjct 7578088 CCTCAAGGTGGGCAGATGCCTGACTCAGTACAGACACACACAGGAAAGCACACACA 7578033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437092879750000