Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq36986 123 5e-23 seq86921 105 1e-17 seq77426 105 1e-17 seq166039 95.1 2e-14 seq52188 86.0 1e-11 >seq36986 Length=206538554 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || || || || || || ||||| | | | | || ||||| ||||| || || Sbjct 16385391 AGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCC 16385332 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||||||||| || || || | ||| ||||| ||| |||||||||| |||||||| ||||| Sbjct 16385331 AGCAAAGATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGAATCTTGGCTTT 16385272 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 | | |||| || ||||| ||||| || || | | | || ||||| ||||| | || Sbjct 16385271 CATACTTTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGGGT 16385212 Query 82793 CTTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 16385211 TTTCACAAAAATTTGCAT 16385194 >seq86921 Length=222198629 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || | ||||||| | | || ||||| ||||| Sbjct 27230161 TGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGTTGC 27230220 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | || ||||| ||||| || ||||| ||||| |||||| |||||| |||||||| Sbjct 27230221 TTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATCTTG 27230280 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || ||||||||||| || ||||| ||||| || || | ||| || |||| Sbjct 27230281 GCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGATCTT 27230333 >seq77426 Length=142431058 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||| ||||| ||||| || ||||| |||| ||||||||| Sbjct 120888963 CCATCTTCCAGTTGCTTGCCAGCCAAGATCAGTCTCTGATGATCAAGAGGAATTCCTTCC 120889022 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || |||| ||||| | || | ||| Sbjct 120889023 TTATCTTGGATCTTGGCCTTTACATTTTCTATTATATCCAAGGGTTCAATCTCGAGAGTG 120889082 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || | || || || | | |||||||| Sbjct 120889083 ATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCAT 120889120 >seq166039 Length=127282370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || |||| ||||| ||||| || ||||| |||| | |||||| Sbjct 52665522 CCATCTTCCAGTTGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCT 52665581 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || ||||| ||||| | || | ||| Sbjct 52665582 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTG 52665641 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || |||| || | || || || | | ||||||| Sbjct 52665642 ATAATCTTCCCCATAAAAGTTTTCATGGAAATCTGCA 52665678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||| ||| || ||||||||||| | ||| || | || ||| | | || || Sbjct 110596373 AGCACCAAGCGCAAGGTGGATTCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCC 110596432 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || ||||| || ||||| ||||| | || || | || || | || ||||| ||| Sbjct 110596433 TCCAGCTGTTTGCCCGCAAAAATTAGACGCTGCTGGTGAGGTGGGACGCCCTCCTTGTCT 110596492 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || || || | ||| ||||| ||| | || ||| | || | || | | || || ||| Sbjct 110596493 TGGATTTTGGTTTTGACATTCTCAGTGGTGTCACTGGGCTTGACCTGGAGGGTGATAGTC 110596552 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||| | ||| ||||| |||||||| Sbjct 110596553 TTACCCATCAGAGGCTTCACAAAGATCTGCAT 110596584 >seq52188 Length=152998503 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | || || || || || || ||||| || || ||| Sbjct 72323481 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 72323422 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | || ||||||||||| | ||| |||||||| | Sbjct 72323421 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 72323362 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | ||||| || |||| Sbjct 72323361 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 72323325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978460568224875