Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq139997 143 3e-29 seq1 102 8e-17 seq77426 98.7 1e-15 seq96624 93.3 4e-14 seq90522 93.3 4e-14 seq86921 93.3 4e-14 seq113784 82.4 7e-11 >seq139997 Length=61081816 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 9478718 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 9478776 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 9478777 CGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTT 9478836 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 9478837 CACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 9478896 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 9478897 CTTCACGAAGATCTGCAT 9478914 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 9479173 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 9479231 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| |||||||||||||| || || |||||| || Sbjct 9479232 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCT 9479291 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 9479292 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 9479351 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 9479352 TCTTCACGAAGATCTGCAT 9479370 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 9478945 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 9479003 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 9479004 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 9479063 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 9479064 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 9479123 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 9479124 TCTTCACGAAGATCTGCAT 9479142 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 9479401 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 9479459 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 9479460 CTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCT 9479519 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 9479520 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 9479579 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 9479580 TCTTCACGAAGATTTGCAT 9479598 >seq1 Length=240380223 Score = 102 bits (112), Expect = 8e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| || | ||| |||||| ||||| ||||| Sbjct 75947377 GGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGTGGTTGTCCTCTAGCTGTTTGCC 75947436 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | | |||| | ||| ||||||| | |||||||| |||||||| ||| ||| || | Sbjct 75947437 CACACAAATCATACGCCGCTGGTCAAGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 75947495 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| || ||| | || || ||| ||| ||||| | ||||| ||| ||||| || | Sbjct 75947496 TGACCTTCTCCATGGTATCATTGGTCTCAACGTCAAGGGTGATGGTCTTGCCCATC--TG 75947553 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 75947554 TCTTCACAAATATCTGCAT 75947572 >seq77426 Length=142431058 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||| ||| || || ||| | | || |||| ||||| |||| Sbjct 116297981 GGTGGACTCTTTCTGGATATGGTAGTCTGACAGAGTGTGGCCAG-CCTCCAGCTGTTTGC 116297923 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| || |||||||| | || ||| |||| || ||||| | ||| || | Sbjct 116297922 CCGCGAAAATCAGATGCTGCTGGACAGGTGGGGTGCCCTCTTTGTCTGGGATTTTGACTT 116297863 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| ||||| |||||| || || | |||| || |||||| |||| | Sbjct 116297862 TGACATTGTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTGGTGGCTTTGCCCATCAGGG 116297803 Query 133642 TTTTTACGAAAATCTG 133657 | || || || ||||| Sbjct 116297802 TCTTCACAAAGATCTG 116297787 >seq96624 Length=569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 494 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 435 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || | ||||||||| || | |||||| |||||| | || |||| | Sbjct 434 GCCAGCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 376 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 375 CTTTGACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 316 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 315 GGGTCTCCACAAAGATCTGC 296 >seq90522 Length=781 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 76 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 135 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || | ||||||||| || | |||||| |||||| | || |||| | Sbjct 136 GCCAGCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 194 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 195 CTTTGACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 254 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 255 GGGTCTCCACAAAGATCTGC 274 >seq86921 Length=222198629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||||| ||||||| || ||| | || || ||||| || Sbjct 160875147 TAGGGTGGACTCTTTCTGGGTATTGTAGTCTAATGAAGTGCAGCCATCTTCCAGCTGTTT 160875206 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || |||| || | ||||||||| || | |||||| |||||| | || |||| | Sbjct 160875207 GCCAGCAAAAATCAGACACTGCTGGTCAGGCGAGATGCCCTCCTTGGC-TTGGACTTTGG 160875265 Query 133580 C-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | |||| | |||| ||||| ||||||| || |||| || || ||| ||||| ||| Sbjct 160875266 CTTTGACATTCTCACTAGTGTCACTGGGCTCAACCTCGAGGGAGATGGTCTTGCCCATCA 160875325 Query 133639 GAGTTTTTACGAAAATCTGC 133658 | || | || || |||||| Sbjct 160875326 GGGTCTCCACAAAGATCTGC 160875345 >seq113784 Length=115468741 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 60440334 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 60440275 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 60440274 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 60440237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481803606355000