Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq136375 311 1e-79 seq101427 221 1e-52 seq63847 91.5 2e-13 >seq136375 Length=94492513 Score = 311 bits (344), Expect = 1e-79 Identities = 634/933 (68%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| ||| || | |||||||| || || | ||| ||| Sbjct 18195127 CCAGGGCTTTATGCCGCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 18195068 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| | | | | ||||| || | || || | Sbjct 18195067 TGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCACCTG 18195011 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||||||| || |||||||| ||||| || ||||||| | Sbjct 18195010 CTCCGAAGACACACACAGAACGCACGTGGACCCCGCTGCAGGGCGGGTAGGGGGCCCCCT 18194951 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| |||||||| |||||||| | ||| || |||||||| | Sbjct 18194950 TGGAGACGTCACCTTCAAAGTACTGCCACTTGACGAACCTCGCGATCGCGTGCATGTCAG 18194891 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | ||||| | | Sbjct 18194890 ACATGTCATACTTCTGG-CTTAGGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGGATA 18194832 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || || ||||| || || || || | ||||||||| |||| | | Sbjct 18194831 GTGGCCCAGAGATACTCATCCGGACTGTAGGTGTCTTTGGCCCACTCCATAAACTTCTGG 18194772 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | | ||| || | ||| | || || || ||| | || | ||| || || || Sbjct 18194771 ATCTTTTCATTCTCTAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCACTG 18194712 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || || |||| ||| | | ||||||| || |||||| || |||||| | | Sbjct 18194711 CCTGAGAACAGGGGCGTTTCAAGAGGAGGGTGCATTTTGTCCGTCCCTGTGTTGGTCAGC 18194652 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 18194651 TTTCCATTAACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCAT 18194596 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 |||| |||||| |||| |||| || | || |||| || || ||||| || Sbjct 18194595 TCTCTCGGACTCTAGGTTGTTTTCACCCATTAACGATTTGAGCTTCCGGACAATCTCCAG 18194536 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| || || || ||||||| ||||| || | || |||| | | || Sbjct 18194535 GTTGGTTTTAATAGGGAAATCCATGCCGCAAAGATTTATCAAGTACCTCCAGTCCGCACT 18194476 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || || || | ||||| || |||||||| || |||||||| || || || Sbjct 18194475 CATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGCACCCGACTCCAAGAGGCATA 18194416 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| |||||||||| | | |||| || ||||| || ||| || || | || ||||| Sbjct 18194415 CACCACGCTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAGCAGGAGGCGATGCCCAT 18194356 Query 162834 CAC---GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| ||||| || | ||| || | ||| || || ||||| | |||||| ||||| Sbjct 18194355 CACCGCGGCCAAAAAGGA-ATCC--TCGGATTTTCTGTCCACGTGAATGCAGTAGAGATT 18194299 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 18194298 CTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCAC 18194239 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||||||||| ||||| ||||| ||||| || Sbjct 18194238 TATAGAATACGCAATGGGAAACTCCGCCTCTTC 18194206 >seq101427 Length=159252932 Score = 221 bits (244), Expect = 1e-52 Identities = 242/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || ||||| ||||||||||| || | | Sbjct 59046737 CAGAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCGGAACCAAAAGTATTGAAGAGGC 59046678 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||| ||||| || || | || || || ||| Sbjct 59046677 ACTTGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAACGTAATGGTTGAGTTCTTGA 59046618 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 59046617 GTTCCAGCTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 59046558 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 59046557 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCCTTGATTTTCTGCCATGTCACAA 59046498 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | |||| |||||||||||||| |||||||||||||||| | | Sbjct 59046497 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCAGCAGCT 59046438 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| ||||| || ||||| Sbjct 59046437 CTTCTTCATCTTGGGTCACCAC 59046416 Score = 111 bits (122), Expect = 2e-19 Identities = 175/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 171505 AGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTT 171564 |||||| |||| | || | |||||||| ||||| || | ||| || ||||||| | Sbjct 59049592 AGTTTGCCTGACGCTGGTCATAGTCCCCAGGTGTAGCACCTGGCAGATTACCTCCT---T 59049536 Query 171565 TCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTT 171624 ||||| || || || || ||||| || || || | || || ||||| || ||||| || Sbjct 59049535 CCCCACCTGGCTCTTGGGGTCTTTGACCTGGAGGACACTCGTGACAGACGTGGTCCCATT 59049476 Query 171625 ACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 | ||| |||| | | |||||| ||||| || || || || | || ||||| | Sbjct 59049475 GGGGTGTGAGAGAA---TCTCAGTACTGTTTTCAATCCCTGACCCAGAGACCTTCCAGGA 59049419 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 || ||||| ||||| | ||| | ||||||||||| || |||| |||||||| || Sbjct 59049418 GATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTACGTGGTCTTCGAAAAA 59049359 Query 171742 CTCATAGTG 171750 | |||||| Sbjct 59049358 TTTATAGTG 59049350 >seq63847 Length=148068395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 237/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | |||||| Sbjct 45329192 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCACATGTATTTAGTAAGTATTTC 45329251 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||| | || | | || || | | ||||||||| || ||||| || | Sbjct 45329252 CA--TGGCACTGGGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGG 45329309 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 45329310 ACCAGGAGGCATAAACTACCCGAACCAACTTACTGGCCATGAAGACATTTGGGAAGCATG 45329369 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | |||| ||| ||||| | Sbjct 45329370 AAATAATTGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACGTGGAT 45329427 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||||| ||||||||||| || | || | || ||||| || || | ||||| || Sbjct 45329428 GCAGTATATGTTCTGAGGGGCATACACAGCTCGGAGCAATCTTTCAAAGTTTTCTATTTT 45329487 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || ||||| || || || || || ||||| || | ||| || | || |||| Sbjct 45329488 CTCATGGACCACCATTGAGTAGGCAATAGGGAAGTCTGACTCTTCTTGGCTCAGAG 45329543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576496964200000