Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq134266 102 5e-17 seq130414 102 5e-17 seq139997 100 2e-16 seq132654 98.7 7e-16 >seq134266 Length=575 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 133 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 192 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || ||||| |||||||| ||||| | |||||| || | || | || |||||||| Sbjct 193 AACTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 252 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 253 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 311 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 312 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 341 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 343 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 402 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 403 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 462 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| || | ||| || | |||||| || | ||||| Sbjct 463 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 521 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 522 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 569 >seq130414 Length=94101111 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || |||||| || || || |||||||| || | Sbjct 5450844 CACCTCCCCTCAAGCGCAGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 5450785 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | | Sbjct 5450784 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 5450725 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || ||| || | ||| || | |||||| || | ||| Sbjct 5450724 GGATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCC 5450666 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 5450665 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 5450616 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 5448439 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5448380 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 5448379 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5448320 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || ||| ||| | ||| || | |||||| || | || || Sbjct 5448319 ATGCCCTCTTTTTCCTGGATCTTCCCTTTGA-CATTCTCGATGGTGTCACTGGGCTCTAC 5448261 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || || || || || ||||||||||| || Sbjct 5448260 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGGT 5448210 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 5450158 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5450099 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 5450098 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5450039 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| || | ||| || | |||||| || | ||||| Sbjct 5450038 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 5449980 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 5449979 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 5449932 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 5450614 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5450555 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 5450554 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5450495 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| || | ||| || | |||||| || | ||||| Sbjct 5450494 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 5450436 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 5450435 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 5450388 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 5448649 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 5448590 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || |||||||| Sbjct 5448589 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 5448530 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 5448529 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5448471 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 5448470 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 5448441 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 5448877 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 5448818 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || |||||||| Sbjct 5448817 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 5448758 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 5448757 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5448699 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 5448698 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 5448669 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| || || || ||||| | || ||| Sbjct 5450368 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 5450309 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| ||||| | |||||| || | || | || |||||||| Sbjct 5450308 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 5450249 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| || | ||| || | |||||| || | ||||| || | ||||| || || Sbjct 5450248 ATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 5450190 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 5450189 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 5450160 >seq139997 Length=61081816 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| ||| |||||| |||||| || ||||||||||| || Sbjct 9478688 CCACCCCTCAGACGAAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 9478747 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 9478748 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 9478807 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 9478808 ATGCCTTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCAC 9478866 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 9478867 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 9478915 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 9479143 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 9479202 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 9479203 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 9479262 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | |||| Sbjct 9479263 GATGCCTTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 9479321 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 9479322 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 9479371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| ||| | |||| || || || |||||| || ||||||||||| || Sbjct 9478915 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 9478974 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| ||| | || Sbjct 9478975 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 9479034 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || ||| |||| || | |||||| || | |||| Sbjct 9479035 GATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 9479093 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 9479094 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 9479143 >seq132654 Length=704 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 359 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 300 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 299 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 240 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || ||| ||| | ||| || | |||||| || | || || Sbjct 239 ATGCCCTCTTTTTCCTGGATCTTCCCTTTGA-CATTCTCGATGGTGTCACTGGGCTCTAC 181 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || ||||| || || || || || ||||||||||| || Sbjct 180 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATGGT 130 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 587 CCCCCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 528 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 527 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 468 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || ||| || | ||| || | |||||| || | ||||| Sbjct 467 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 409 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 408 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327631872840000