Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq139997 104 5e-17 seq36986 98.7 2e-15 seq77426 96.9 8e-15 seq166039 95.1 3e-14 >seq139997 Length=61081816 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 9478899 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 9478840 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| || || || ||||| Sbjct 9478839 GTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTT 9478780 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 9478779 GCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 9478720 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 9478719 ACTCTCCATCTGGTT 9478705 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 9479355 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 9479296 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| || || || ||||| Sbjct 9479295 GTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTT 9479236 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 9479235 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 9479176 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9479175 ACCCTGCACCTGGT 9479162 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 9479127 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 9479068 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || ||||| Sbjct 9479067 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 9479008 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 9479007 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 9478948 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9478947 ACCCTGCACCTGGT 9478934 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 9479583 AAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 9479524 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || ||||| Sbjct 9479523 GTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTCATCTTT 9479464 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 9479463 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 9479404 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9479403 ACCCTGCACCTGGT 9479390 >seq36986 Length=206538554 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/207 (72%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || |||| | | || || ||| || || ||| | ||| | Sbjct 16385209 AAAACCCTTACAGGAAAGACCATCAGTGTTGAGGTCGAACCCTCGGATACAATAGAA--A 16385266 Query 206245 GTA---AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 ||| |||| || |||||| || || |||| |||| || || | || || || ||| Sbjct 16385267 GTATGAAAGCCAA-GATTCAGGATAAGGAAGAAATTCCTCCTGATGAGCAGAGTCTGATC 16385325 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||||| ||||||||||| | |||||| | || |||||| | || || ||| Sbjct 16385326 TTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAG 16385385 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTT 206388 || | ||||| || | ||||||||| Sbjct 16385386 TC--CACTTCATCTCG--TTGAGACTT 16385408 >seq77426 Length=142431058 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || ||||||||| | || ||| ||||| ||||| Sbjct 120889045 GTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCTTGATCATCAGAGACTGATCTTG 120888986 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||||| || |||||| |||| || |||| Sbjct 120888985 GCTGGCAAGCAACTGGAAGATGGATGTACTTT----GACTACAACATCCAAAAGTAGTCC 120888930 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 | |||||| ||||| ||||||||| Sbjct 120888929 ATTCTTCATCTTGTGTTGAGACTT 120888906 >seq166039 Length=127282370 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 206206 ATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAA 206265 |||||| | || | ||| || || ||| | ||| |||||| ||||| ||||| Sbjct 52665643 ATCACTCTTGAGATTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAAGAT 52665584 Query 206266 AAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGAT 206325 ||||||||| || | || ||| ||||| |||||| | || ||||| |||||||| Sbjct 52665583 AAAGAAGGACTTCCTCTTGATCATCAGAGACTGATCTTCACTGGCAAGCAACTGGAAGAT 52665524 Query 206326 GGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||| | ||||| || |||||| | || || |||| |||||||| ||| | |||||| Sbjct 52665523 GGATGTACTTT----GACTACAACATTCAAAAGTAGTCCACTCTTCATCTTATGTTGAGA 52665468 Query 206386 CTTCG 206390 |||| Sbjct 52665467 TTTCG 52665463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177768401107625