Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq101427 284 1e-71 seq130414 167 3e-36 seq14907 159 4e-34 seq152761 141 1e-28 seq86921 125 8e-24 >seq101427 Length=159252932 Score = 284 bits (314), Expect = 1e-71 Identities = 255/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | |||||||||||| || || ||| | | |||||| ||| Sbjct 59046416 GTGGTGACCCAAGATGAAGAAGAGCTGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 59046475 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||||||||| | | ||||| Sbjct 59046476 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAA 59046535 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| || |||||||| || |||||||||||| Sbjct 59046536 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 59046595 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| | |||| | ||||||||||| || || |||||||||||| | Sbjct 59046596 ATAAACATCACCCAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTG 59046655 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| || || ||||| || ||||| ||||| || Sbjct 59046656 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGA 59046715 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 ||||||||||||||||| Sbjct 59046716 AAAGCCTGCCTCACCCTCTC 59046735 Score = 217 bits (240), Expect = 2e-51 Identities = 217/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || ||||||||||| || |||||| | || |||| Sbjct 59049324 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTTTTCGAAGACCACGTAAATATCA 59049383 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| | Sbjct 59049384 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCAGGGA 59049443 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| ||| |||| || || | ||||| || || ||||| || ||||| | Sbjct 59049444 TTGAAAACAGTACTGAGATTCTCTCACACCCCAATGGGACCACGTCTGTCACGAGTGTCC 59049503 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||| ||| |||| |||||||| |||||||| ||| |||| Sbjct 59049504 TCCAGGTCAAAGACCCCAAGAGCCAGGTGGGGAAGGAGGTAATCTGCCAGGTGCTACACC 59049563 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | | | || | | | ||| ||||| | ||| |||| Sbjct 59049564 TGGGGACTATGACCAGCGTCAGGCAAACTTTGGACAAAGGTA 59049605 >seq130414 Length=94101111 Score = 167 bits (184), Expect = 3e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 42658822 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 42658881 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || |||||||||||||||||||| || || || || | Sbjct 42658882 GGGTACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATT 42658941 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| || |||||||| ||||| ||||| Sbjct 42658942 CACCACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCAT 42658986 >seq14907 Length=168638799 Score = 159 bits (176), Expect = 4e-34 Identities = 539/825 (65%), Gaps = 41/825 (5%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||| || ||||| | | |||||| Sbjct 15957360 GTATTCCCTGGTGTTCGTGGTTGGTCTGCTGGGCAACGCGATGGTGGTGGTGATCCTCAC 15957419 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| ||||||||||||||||||||||| |||| ||||| || ||| Sbjct 15957420 AAAATACAGGAGGCTCCGGATCATGACCAACATCTTCCTGCTCAATTTGGCCATTTCTGA 15957479 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || | || |||||||||| | | || |||| |||| Sbjct 15957480 CTTGCTCTTCCTGTTCACTCTGCTGTTCTGGATTCACTAC--AGCAGGTCGAACGAGTGG 15957537 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||| || |||| |||||||||| | | || |||| | || ||| |||| Sbjct 15957538 GTG----TTCGGCCACTTCATGTGTAAGCTCCTCTCCGGGCTTTACTACATGGGCTTGTA 15957593 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| | | || ||||||||| |||| | ||| |||| || || | || |||| Sbjct 15957594 CAGCGAGATTTTCTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCATCGTCCACGC 15957653 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | || | ||| || | | || ||| || ||| |||| |||| Sbjct 15957654 CGTGTTCGCCCTGCGGACCCGGACCGTCACTTTCGGTATCATCATGAGCGTCCTCACCTG 15957713 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCC---AATAATGC 9026 | ||||| | | | | || | || || ||| |||| || | ||| ||| |||| Sbjct 15957714 GGGCCTGGCAGGGATAGCGGCCCTCCCTGAATTTGTCTTCCATCAGTCCCAAAATGATGC 15957773 Query 9027 --CACAG-GCA--AGGGGGTCT-----GCCAAGCCTCCTACACAGACTTTTGGAAGGGGG 9076 |||| || | | || ||| | || | | || |||||| | Sbjct 15957774 TGAACAGTACATCTGTTTGCCTCTTTATCCAGGAGGCCAAGA-GGATAACTGGAAGCGTT 15957832 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | ||||||| ||| ||| || ||||||| |||| ||||||||| ||| Sbjct 15957833 TCCATGCTCTGAGCATGAACATCCTCAGTCTGGCCCTGCCTCTGCTCATCATGGCCGTCT 15957892 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACC---TG 9192 ||||| | ||| || | | || || | | |||| ||| | ||||| | Sbjct 15957893 GCTACGCGGGAATTATTAGGACACTGCTGAGATGCCC-CAATA-------AAACCAAGTA 15957944 Query 9193 C-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTA 9251 | | ||| || ||||||||| |||| ||||| | | ||| | || |||| |||||| Sbjct 15957945 CAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATGTTCTGGACCCCCTA 15958004 Query 9252 CAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAG 9310 |||| | | ||| || | | | |||| | | | |||| || ||| ||||| Sbjct 15958005 CAACCTGGTCCTCCTTCTCTCTGCTTTCCAAACGATCTTCTTTGAGGTCAG-TTGTGA-- 15958061 Query 9311 CGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACT 9367 || | ||| || | || ||||| | |||| | ||| |||| |||| ||| |||| Sbjct 15958062 -GCAGAGCAAATGGCTCGATGTGGCCATGCAGGTGACAGAGGTGATAGCCTACACGCACT 15958120 Query 9368 GCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| ||||||||||||||||| || || || || | ||||| Sbjct 15958121 GCTGCGTTAACCCCGTCATCTACGCCTTCGTAGGGGAGAGGTTCC 15958165 Score = 104 bits (114), Expect = 3e-17 Identities = 249/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||| | ||||||| || | ||||| | Sbjct 15919327 GTACTCGCTGGTGTTCGTCGTCGGCCTGGTGGGCAACGTCCTGGTGCTCTTGGTCCTGGT 15919268 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||| || ||||||| ||||| ||| ||||||||||| | ||| Sbjct 15919267 GCAGCACAAGAGGCTCAAGAGTATGACCAGCATCTACCTCCTCAACCTGGCCGTCTCTGA 15919208 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGGTG 8788 ||| || | | ||||| || ||||||||||| ||| | | || || ||||| Sbjct 15919207 CCTCCTTTTCCTCTTCACGCTGCCCTTTTGGATCGACTACAAGCTGAAGGATGACTGGAT 15919148 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 | | || || |||| || ||| | | ||| |||| || | | ||| Sbjct 15919147 TTTCAG-CGACG-GCACC-----TGCAAGCTGCTCTCGGGGCTTTATTACATAGGCTTGT 15919095 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACG 8908 ||||||| || | || ||||||||| |||| |||||||||| || || | || ||| Sbjct 15919094 ACAGCGAGATCTTTTTCATCATCCTGCTGACGGTGGACAGGTACCTGGCCATCGTCCACG 15919035 Query 8909 CGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCT 8968 | ||| | || ||| ||| || | | ||| ||||| |||| | ||||| Sbjct 15919034 CCGTGTTCGCCCTGCGGGTGCGCACCGTCCTCTTCGGCGTCCTCAGCAGCGCCGCGGCCT 15918975 Query 8969 GGATTCTGGCTGT 8981 ||| ||||| || Sbjct 15918974 GGAGCCTGGCCGT 15918962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 15918611 TGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCG 15918552 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || ||||| || | ||||| Sbjct 15918551 TCATCTACGCCTTCGTGGGAGAGAGGTTCC 15918522 >seq152761 Length=70119229 Score = 141 bits (156), Expect = 1e-28 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| |||||||| ||||||||||||| Sbjct 36280964 AGGGTTACCTGGGTTGCCAAGCCTTGTCCGAGATGATCCAGTTTTATTTGGAGGAGGTGA 36281023 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || | | ||| ||||| || |||| || |||| Sbjct 36281024 TGCCCCAGGCTGAGAA------CGAG------GACCCAGACATCAAACAGCACGTGAACT 36281071 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| |||||||| |||||||| | |||| |||||||| ||| Sbjct 36281072 CCCTGGGAGAAAAGCTGAAGACCCTCCGGCTGAGACTGCGGCGCTGT 36281118 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| ||| |||||||||| || || || ||||||| Sbjct 36283273 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGGGTGAGTTTGACATCTTCATCAACTACA 36283332 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 |||||||||||||||||| || |||| Sbjct 36283333 TAGAAGCTTACATGACAATGAAGATGA 36283359 >seq86921 Length=222198629 Score = 125 bits (138), Expect = 8e-24 Identities = 186/260 (72%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 146874 CTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||| ||||| ||||| || | || | || ||| ||||| |||||||| |||| || Sbjct 104793455 CTTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGA--AGCTGCATTTTCAGCAGCTCAACA 104793398 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || | ||||| | || || || |||| || || | ||||| ||||| ||||| Sbjct 104793397 TGACTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTGGGCTTCAGGCCT 104793338 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | ||| ||| | ||||||||||||| | ||||||| | || |||| || || Sbjct 104793337 GTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTGGAGGGCACAACC 104793278 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||||||||||| || || ||| |||||||||| || || ||||| || | ||| ||| Sbjct 104793277 AGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCATTTTCCAGGTAG 104793218 Query 147112 AACTGGCACAGGATGTGGCA 147131 |||||||| ||| ||||| Sbjct 104793217 AACTGGCAAAGGGAATGGCA 104793198 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 147372 GGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGA 147431 |||||| | | ||||||||| ||||||||||| || || ||| || || ||||| Sbjct 104792975 GGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAGTTCCCAAGCGTTTGTGGA 104792916 Query 147432 GCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGT 147491 ||| ||| ||||| |||| |||||||||||| ||| || | | || ||||| || Sbjct 104792915 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGGATACAGGTTTGGTTGT 104792856 Query 147492 CAGCAGGGGGAACTGGTCCC 147511 |||||| || || | |||| Sbjct 104792855 CAGCAGAGGAAATTCATCCC 104792836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581536050300000