Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq132654 122 8e-23 seq130414 122 8e-23 seq139997 113 4e-20 seq36986 86.0 6e-12 >seq132654 Length=704 Score = 122 bits (134), Expect = 8e-23 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || |||||||| || || ||||| Sbjct 324 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAA 265 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || ||| || ||| |||||| || | | | Sbjct 264 GATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATT 205 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||||||||| || ||||| Sbjct 204 CTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCAC 145 Query 35725 AAATATCTGCAT--TCTGT 35741 || |||||||| ||||| Sbjct 144 GAAGATCTGCATGGTCTGT 126 >seq130414 Length=94101111 Score = 122 bits (134), Expect = 8e-23 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || |||||||| || || ||||| Sbjct 5448404 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAA 5448345 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || ||| || ||| |||||| || | | | Sbjct 5448344 GATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCCTGGATCTTCCCTTTGACATT 5448285 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||||||||| || ||||| Sbjct 5448284 CTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCAC 5448225 Query 35725 AAATATCTGCAT--TCTGT 35741 || |||||||| ||||| Sbjct 5448224 GAAGATCTGCATGGTCTGT 5448206 >seq139997 Length=61081816 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 9478951 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 9479010 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 9479011 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATT 9479070 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 9479071 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 9479130 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9479131 GAAGATCTGCAT 9479142 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 9479407 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 9479466 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||||| | | Sbjct 9479467 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACATT 9479526 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 9479527 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 9479586 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 9479587 GAAGATTTGCATTTTG 9479602 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| |||||||| Sbjct 9478723 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAA 9478782 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || || |||||| ||||| | | Sbjct 9478783 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATT 9478842 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 9478843 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 9478902 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9478903 GAAGATCTGCAT 9478914 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 9479179 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 9479238 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || || |||||| ||||| | | Sbjct 9479239 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATT 9479298 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 9479299 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 9479358 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9479359 GAAGATCTGCAT 9479370 >seq36986 Length=206538554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | ||| || || | || ||||| ||||| || ||||| Sbjct 16385385 CTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 16385326 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| | ||||| || | ||||| ||||| ||| ||||| |||| | | Sbjct 16385325 GATCAGACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGAATCTTGGCTTTCATACT 16385266 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || | ||| ||||| || |||| || || || || | |||||||| Sbjct 16385265 TTCTATTGTATCCGAGGGTTCGACCTCAACACTGATGGTCTTTCCTGTAAGGGTTTTCAC 16385206 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 16385205 AAAAATTTGCAT 16385194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449285554535000