Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq24225 100 2e-16 seq130414 98.7 8e-16 seq159875 95.1 1e-14 seq139997 82.4 6e-11 >seq24225 Length=140925898 Score = 100 bits (110), Expect = 2e-16 Identities = 89/109 (82%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| ||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 133424108 CAAGAAGTTCAGATTACT-GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 133424050 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| ||||| || || || || ||||| |||||| Sbjct 133424049 CATCCATTCTGAGATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 133424001 >seq130414 Length=94101111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| ||||| ||||||||||||| Sbjct 42658988 TGATGGCCCTGCCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAATGGTGAACTGT 42658929 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || || ||||| |||||||| || || || || || ||||| || | Sbjct 42658928 CCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTACCCTTCAACATCGCCA 42658869 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || | |||||||| || ||||| |||||| Sbjct 42658868 GCTACTCCCTGCTCACCTACATGATCGCACAC 42658837 >seq159875 Length=83953389 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| |||||||| |||||||| || ||||| | Sbjct 48385506 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACAAATTTCTTTGAGA 48385447 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| ||||| || Sbjct 48385446 AACGAGTTGCAGAGTATCAACG 48385425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||||| |||||||| Sbjct 48408133 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAAAAGGCACAGGCA 48408074 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 48408073 TCCTTCTGGACAGCAGAAGAGGT 48408051 >seq139997 Length=61081816 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 43314887 AACAGTGGTTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 43314828 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 43314827 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 43314768 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 43314767 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 43314726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396159625838125