Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq136375 178 2e-39 >seq136375 Length=94492513 Score = 178 bits (196), Expect = 2e-39 Identities = 268/379 (71%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 ||| |||| |||||| || ||||||| ||||||||||| || || || || ||| Sbjct 18194182 TATATCGTAGAGCCCCTTAGTAAAGAAGAGGCGGAGTTTCCCATTGCGTATTCTATAGTG 18194241 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 | || ||||| ||||| ||| | || | ||||||||||||||||| || ||||| Sbjct 18194242 GTTCATCACAAAATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAAT 18194301 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGG 13836 ||||||||| | ||||||||| || |||| || | || ||| | || || Sbjct 18194302 CTCTACTGCATTCACGTGGACAGAAAATCCGAGGATTCCTTTTTGGCCGCG--GTGATGG 18194359 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 ||||||| |||||| |||||| | ||||| | |||| | ||||||||| | Sbjct 18194360 GCATCGCCTCCTGCTTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGCGTGGTGTATG 18194419 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 ||| |||||||| |||||||||||||||| ||||||| ||||| || | Sbjct 18194420 CCTCTTGGAGTCGGGTGCAGGCCGACCTCAACTGCATGCAAGACCTCTACAGGATGAGTG 18194479 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 | ||||||||| || | || || ||||| ||||| ||||| | || |||||||||| Sbjct 18194480 CGGACTGGAGGTACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCTGG 18194539 Query 14017 AGATCGTGCGGGCGCTGAA 14035 |||| || ||| ||| || Sbjct 18194540 AGATTGTCCGGAAGCTCAA 18194558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656535511520000