Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq86921 190 2e-43 seq130414 147 2e-30 >seq86921 Length=222198629 Score = 190 bits (210), Expect = 2e-43 Identities = 426/633 (67%), Gaps = 20/633 (3%) Strand=Plus/Plus Query 34217 GAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTG 34276 |||||||| |||||||| || |||| ||| | || |||||| || | |||||| ||||| Sbjct 104792841 GAATTTCCTCTGCTGACAACCAAACCTGTATCCTAGAAGGGTGTTTTGGAGGAGTTGCTG 104792900 Query 34277 TGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGG 34336 ||||| | | ||| |||| ||| | ||| || || ||| ||| ||||| |||||| Sbjct 104792901 TGGTTTATCAAGGGATCCACAAACGCTTGGGAACTGTCTTCCAAGGGAGTGAAAATCTGG 104792960 Query 34337 GACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGG 34395 ||| | | ||||| ||||| | |||||| || | ||| || | | || |||| Sbjct 104792961 GACTCAAATGGGTCCTGAGACCTCTTGGACA-GCCAGTATTCTGCAACAGAGAAGAAGGG 104793019 Query 34396 CGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAG 34455 ||||| ||||| || || || ||||||| | | || || | Sbjct 104793020 -GACTTAGGCCCAGTTTATAACTTTCAGTGGAAAATA-------CAAAG-ATAAGA---- 104793066 Query 34456 CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAA 34515 | | || ||||| || || |||| ||||| ||||| | |||| ||||| | || Sbjct 104793067 --ATTCAGATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAGGTGACTGACACAATCAA 104793124 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 ||| |||||||||||| ||| | |||| | |||||| || || ||||||||| | Sbjct 104793125 AACCAACTGTGATGACAGAAGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTCCCTTT 104793184 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||| ||| | | ||||| |||| ||||| |||||| | | ||||| |||||||| Sbjct 104793185 AATGGC--TCCTCTC-TGCCATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTGTC 104793241 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||| ||||| || | | || ||||||||||| | | ||||| | || | | || Sbjct 104793242 CTGTCAGCTGTACCGGAGCTCAGGAGACATGGGCCTGGTTGTGCCCTCCAGTGTCACCAG 104793301 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || |||||||| |||| ||| | || || || || || || | | Sbjct 104793302 CTATGCCCTGCTCACCTACAGGATGGTACACATCACAGGCCTGAAGCCCAATGACTTCAT 104793361 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 ||||| ||||| ||||| ||||| ||||||| || | |||| ||| || ||||| Sbjct 104793362 ACATACTTTGGGAGATGCACATATTTACCTGAGTCATGTTGAGCTGCTGAAAATGCAGCT 104793421 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAA 34848 || |||| || | || ||||| |||| || Sbjct 104793422 TCAGTGAGAACCAAGGCCTTTCCCGAAGCTTAA 104793454 Score = 190 bits (210), Expect = 2e-43 Identities = 426/633 (67%), Gaps = 20/633 (3%) Strand=Plus/Minus Query 6497 TTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGG 6556 || |||| ||||| || | || |||| || ||||| || ||| |||| | || Sbjct 104793454 TTAAGCTTCGGGAAAGGCCTTGGTTCTCACTGAAGCTGCATTTTCAGCAGCTCAACATGA 104793395 Query 6557 TTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACG 6616 ||||||| ||||| ||||| ||||| ||||| | | || || || || | Sbjct 104793394 CTCAGGTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTGGGCTTCAGGCCTGTG 104793335 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 | || | ||| |||| |||||||| || || || | | || | ||||| | | Sbjct 104793334 ATGTGTACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTGGAGGGCACAACCAGG 104793275 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||||| || | | || ||||| ||||||||||| ||||| | | |||||| Sbjct 104793274 CCCATGTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCATTTTCCAGGTAGAAC 104793215 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||||| |||| ||||| | | ||| ||||| | ||||||||| || || |||||| | Sbjct 104793214 TGGCAAAGGGAATGGCA-GAGAGGA--GCCATTAAAGGGAGATCTTTTGGATTCCACCCA 104793158 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGC 6856 |||| | ||| |||||||||||| ||| || | ||||| |||| | ||||| Sbjct 104793157 CACAGGATGATTCTTCTGTCATCACAGTTGGTTTTGATTGTGTCAGTCACCTTTTGCAGT 104793098 Query 6857 TGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGT 6916 ||||| |||| || || ||||| || | | | || || | | Sbjct 104793097 TGGTCTACTCCTTGACCAGAATAATCTGAAT------TCTTAT-CTTTG-------TATT 104793052 Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG-GGAACCCCCG 6975 ||||||| || || || ||||| ||||| |||| || | | || ||| | | Sbjct 104793051 TTCCACTGAAAGTTATAAACTGGGCCTAAGTC-CCCTTCTTCTCTGTTGCAGAATACTGG 104792993 Query 6976 CTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAG 7035 | |||||| | ||||| ||||| | | ||||||||| ||||| ||| ||| || || Sbjct 104792992 C-TGTCCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAG 104792934 Query 7036 CTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCA 7095 ||| | ||| |||| ||| | | |||||||||| |||||| | || |||||| | Sbjct 104792933 TTCCCAAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTA 104792874 Query 7096 GTACACACGTTTCGTCGTCAGCAGCGGAAATTC 7128 | | ||| |||| || |||||||| |||||||| Sbjct 104792873 GGATACAGGTTTGGTTGTCAGCAGAGGAAATTC 104792841 >seq130414 Length=94101111 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| || || || | ||| Sbjct 42658838 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGTACACCCAGGCCC 42658897 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || |||||||||||||| || |||||| | |||||||| ||| Sbjct 42658898 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACCACGTAGAACTGG 42658957 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||||| || || ||||||||||| ||||| Sbjct 42658958 CAAAGAGCATGGCACGGAGGCAGGGCCATCAGAGGAAGATC 42658998 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || |||||||| | || ||||| |||||||| | |||| Sbjct 42658998 GATCTTCCTCTGATGGCCCTGCCTCCGTGCCATGCTCTTTGCCAGTTCTACGTGGTGAAT 42658939 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || |||||||||||||| || || | || ||||||||||| | || || || ||| Sbjct 42658938 GGTGAACTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGTGTACCCTTC 42658879 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 42658878 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCACA 42658838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446762822190000