Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq52188 223 3e-53 seq101427 181 9e-41 seq63847 150 1e-31 seq130414 122 7e-23 seq86921 93.3 3e-14 >seq52188 Length=152998503 Score = 223 bits (246), Expect = 3e-53 Identities = 386/555 (70%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||| | ||||| || | || |||||||| || || || || | ||||| Sbjct 51603783 CTAAACTGTATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 51603842 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| || |||| |||| |||||| | | || || | Sbjct 51603843 TGGCCGCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 51603902 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA- 2315 || ||||||||| | || |||||||| || ||||||||||| || |||||| || Sbjct 51603903 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAAG 51603962 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACA-CCTTAAAGAGCCAC 2374 || || ||||| || ||||||| ||| | ||||| |||||| | ||| | || || | Sbjct 51603963 AATCAA-CCTTTAAAGGACAGAATTAATATAGTTCTTAGTAGAGAACCTCCAGGAACCTC 51604021 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || |||| ||| |||| |||||| | ||| | || | || |||| || Sbjct 51604022 CACAAGGAACTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAAC 51604081 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | |||| | | ||||| |||| || || || ||||| ||| ||| Sbjct 51604082 CAGAATTAGCACATAAACTGGACATGGTTTGGGTAATGGGAGGTAGTTCTGTTTATAAGG 51604141 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | || | | | | | ||| || | ||||||||| |||| |||||| Sbjct 51604142 AAGCCATGAACAGGCCAGGGCATCTTAGGCTACTTGTGACAAGGATTATGCAGGAATTTG 51604201 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| |||| || |||||| || || | |||||||||| || | |||| | Sbjct 51604202 AAAGTGACACATTTTTTCCAGAAGTTGATTTGGAGAAATACAAACTTCTCCCAGAATACC 51604261 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| |||| | || || || || || |||| ||||||||||| |||| | Sbjct 51604262 CAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAGG 51604321 Query 2675 aaaaaaaaaCATAAT 2689 | || || | |||| Sbjct 51604322 AGAAGAACAATTAAT 51604336 >seq101427 Length=159252932 Score = 181 bits (200), Expect = 9e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || ||||||||||||||||| ||| Sbjct 59046488 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAAAACATGGTCACC 59046547 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || || || || || ||||| || Sbjct 59046548 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 59046607 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || || |||||||| || || |||| ||||||||| Sbjct 59046608 CAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTGGAGGATGAAGGG 59046667 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| || |||||||| ||||||| || || || Sbjct 59046668 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 59046727 Query 1521 ACCCT 1525 ||||| Sbjct 59046728 ACCCT 59046732 >seq63847 Length=148068395 Score = 150 bits (166), Expect = 1e-31 Identities = 372/556 (67%), Gaps = 19/556 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| |||| ||||| || | || | |||||| | || || || ||| Sbjct 59006651 CTAAACTGCATTGTCGCTGTGTCCCAGAACAAGGGCATCTGCAAGAACGGGGGCGTGCTG 59006710 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254 | ||| || || | |||||||| || || |||| | || |||||| | |||||| Sbjct 59006711 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCCAAGAATGACCACATCTTCCT 59006770 Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312 | || || || | | | || |||||||| || ||||||||||| || |||||| Sbjct 59006771 CATAGAACGTAAGCAAACTTTAGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAA 59006830 Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370 || || ||| ||||| || || ||||| ||| | ||||||||| || |||||||||| Sbjct 59006831 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 59006889 Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT 2429 || || | | ||||| ||| |||| |||||| | | | || | || |||| Sbjct 59006890 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGTCAATGCCTTAAAAGTTATT-- 59006947 Query 2430 AGGACCA----GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTG 2485 || || |||||| | | | ||| | | | |||||||| | || || || |||| Sbjct 59006948 --GAGCAATTGGAATTAGCAAATAAAGTGAACATGGTTTGGATAGTGGGAGGCAGTTCTG 59007005 Query 2486 TCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545 | ||| |||| | || | | | | || | | | || ||| | ||||||||| ||| Sbjct 59007006 TTTATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGC 59007065 Query 2546 AAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTA 2605 | ||||||||| |||| ||| || ||||| || || | ||||| |||| | Sbjct 59007066 AGAAATTTGAAAGTGACACACTTTTTCCAGACTTTGATTTGGAGAAATATAAACTTCCCC 59007125 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665 | | || |||||| ||| |||| || || || || || || ||| |||||||||| Sbjct 59007126 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTG 59007185 Query 2666 AGATATATGaaaaaaa 2681 | |||||| ||| || Sbjct 59007186 AAGTATATGCAAAGAA 59007201 >seq130414 Length=94101111 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || ||||||||| | ||||| || ||||||||| Sbjct 80523578 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 80523519 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| ||| || | |||| || |||||| Sbjct 80523518 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 80523459 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 80523458 ATCGCCCTGTGGATGACTGA 80523439 >seq86921 Length=222198629 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| |||||| ||| ||| || | ||| ||||| || | |||||| Sbjct 104793421 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 104793362 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 ||||| ||| || | || ||||| | ||| | ||| |||| || | || ||| Sbjct 104793361 ATGAAGTCATTGGGCTTCAGGCCTGTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAG 104793302 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 |||| ||| | | || ||| |||| ||||||||| |||| ||| |||||| || || Sbjct 104793301 CTGGTGACACTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAG 104793242 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || ||| | | || ||||| Sbjct 104793241 GACAGCTCACCATTTTCCAGGTAGAACTG 104793213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413124909440500