Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07]
267,625 sequences; 2,641,342,258 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq52188 223 3e-53
seq101427 181 9e-41
seq63847 150 1e-31
seq130414 122 7e-23
seq86921 93.3 3e-14
>seq52188
Length=152998503
Score = 223 bits (246), Expect = 3e-53
Identities = 386/555 (70%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
||||||||||| | ||||| || | || |||||||| || || || || | |||||
Sbjct 51603783 CTAAACTGTATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTGCCC 51603842
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256
||||| || || | |||||||| || |||| |||| |||||| | | || || |
Sbjct 51603843 TGGCCGCCGCTCAGGAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCATCAGTA 51603902
Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA- 2315
|| ||||||||| | || |||||||| || ||||||||||| || |||||| ||
Sbjct 51603903 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAAGAAG 51603962
Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACA-CCTTAAAGAGCCAC 2374
|| || ||||| || ||||||| ||| | ||||| |||||| | ||| | || || |
Sbjct 51603963 AATCAA-CCTTTAAAGGACAGAATTAATATAGTTCTTAGTAGAGAACCTCCAGGAACCTC 51604021
Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434
||| || |||| ||| |||| |||||| | ||| | || | || |||| ||
Sbjct 51604022 CACAAGGAACTCATTTTCTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAAC 51604081
Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494
|||||||| | | | |||| | | ||||| |||| || || || ||||| ||| |||
Sbjct 51604082 CAGAATTAGCACATAAACTGGACATGGTTTGGGTAATGGGAGGTAGTTCTGTTTATAAGG 51604141
Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554
| ||| | || | | | | | ||| || | ||||||||| |||| ||||||
Sbjct 51604142 AAGCCATGAACAGGCCAGGGCATCTTAGGCTACTTGTGACAAGGATTATGCAGGAATTTG 51604201
Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614
|| |||| |||| || |||||| || || | |||||||||| || | |||| |
Sbjct 51604202 AAAGTGACACATTTTTTCCAGAAGTTGATTTGGAGAAATACAAACTTCTCCCAGAATACC 51604261
Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674
||||||||| |||| | || || || || || |||| ||||||||||| |||| |
Sbjct 51604262 CAGGTGTTCTTTCTGATATCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAGG 51604321
Query 2675 aaaaaaaaaCATAAT 2689
| || || | ||||
Sbjct 51604322 AGAAGAACAATTAAT 51604336
>seq101427
Length=159252932
Score = 181 bits (200), Expect = 9e-41
Identities = 187/245 (76%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||| | || || ||||||||||||||||| |||
Sbjct 59046488 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTAAGCCCAGAAAACATGGTCACC 59046547
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| |||||||| || ||||| || || || || || || ||||| ||
Sbjct 59046548 TTCAGCAAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAACATCACC 59046607
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || || |||||||| || || |||| |||||||||
Sbjct 59046608 CAGCTGGAACTCAAGAACTCAACCATTACGTTCTGGAATACCACCCTGGAGGATGAAGGG 59046667
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||||||| | || || |||||||| || |||||||| ||||||| || || ||
Sbjct 59046668 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAGATCTCAGGAAAAGCCTGCCTC 59046727
Query 1521 ACCCT 1525
|||||
Sbjct 59046728 ACCCT 59046732
>seq63847
Length=148068395
Score = 150 bits (166), Expect = 1e-31
Identities = 372/556 (67%), Gaps = 19/556 (3%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| |||| ||||| || | || | |||||| | || || || |||
Sbjct 59006651 CTAAACTGCATTGTCGCTGTGTCCCAGAACAAGGGCATCTGCAAGAACGGGGGCGTGCTG 59006710
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAA----AC-ATTTTCAAAAAATGACATCTTCTTCCA 2254
| ||| || || | |||||||| || || |||| | || |||||| | ||||||
Sbjct 59006711 TAGCCCCCGCTCAGGAATGAATTCAAGTACACTATTTCCCAAGAATGACCACATCTTCCT 59006770
Query 2255 CT--GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCAT 2312
| || || || | | | || |||||||| || ||||||||||| || ||||||
Sbjct 59006771 CATAGAACGTAAGCAAACTTTAGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCAA 59006830
Query 2313 TAA-AAGCAGGCCTTTGAAC-AACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAG 2370
|| || ||| ||||| || || ||||| ||| | ||||||||| || ||||||||||
Sbjct 59006831 GAAGAATCAG-CCTTTAAAGGAAAAGAATTAATTTAGTTCTCAGTTGAGACCTTAAAGAA 59006889
Query 2371 CCACCACGTGGGGCTCACTTTG-TTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT 2429
|| || | | ||||| ||| |||| |||||| | | | || | || ||||
Sbjct 59006890 CCTCCCCAAGAAGCTCATTTTTCTTGCCAAAAGTCTGGTCAATGCCTTAAAAGTTATT-- 59006947
Query 2430 AGGACCA----GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTG 2485
|| || |||||| | | | ||| | | | |||||||| | || || || ||||
Sbjct 59006948 --GAGCAATTGGAATTAGCAAATAAAGTGAACATGGTTTGGATAGTGGGAGGCAGTTCTG 59007005
Query 2486 TCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGC 2545
| ||| |||| | || | | | | || | | | || ||| | ||||||||| |||
Sbjct 59007006 TTTATAAGGAAACCACGAAGAAACCAGGCCACCTTAGACTATTTGTGACAAGGATTATGC 59007065
Query 2546 AAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTA 2605
| ||||||||| |||| ||| || ||||| || || | ||||| |||| |
Sbjct 59007066 AGAAATTTGAAAGTGACACACTTTTTCCAGACTTTGATTTGGAGAAATATAAACTTCCCC 59007125
Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665
| | || |||||| ||| |||| || || || || || || ||| ||||||||||
Sbjct 59007126 CAGTATACCCAGGTATTCTTTCTGATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTG 59007185
Query 2666 AGATATATGaaaaaaa 2681
| |||||| ||| ||
Sbjct 59007186 AAGTATATGCAAAGAA 59007201
>seq130414
Length=94101111
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | ||||| || ||||||||| | ||||| || |||||||||
Sbjct 80523578 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 80523519
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| ||| || | |||| || ||||||
Sbjct 80523518 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGAGAGATGTCGCCCCTGGTGGACAAC 80523459
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 80523458 ATCGCCCTGTGGATGACTGA 80523439
>seq86921
Length=222198629
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | |||||| |||||| ||| ||| || | ||| ||||| || | ||||||
Sbjct 104793421 AGCTGCATTTTCAGCAGCTCAACATGACTCAGGTAAATATGTGCATCTCCCAAAGTATGT 104793362
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
||||| ||| || | || ||||| | ||| | ||| |||| || | || |||
Sbjct 104793361 ATGAAGTCATTGGGCTTCAGGCCTGTGATGTGTACCATCCTGTAGGTGAGCAGGGCATAG 104793302
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
|||| ||| | | || ||| |||| ||||||||| |||| ||| |||||| || ||
Sbjct 104793301 CTGGTGACACTGGAGGGCACAACCAGGCCCATGTCTCCTGAGCTCCGGTACAGCTGACAG 104793242
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTG 118664
|| ||||| || ||| | | || |||||
Sbjct 104793241 GACAGCTCACCATTTTCCAGGTAGAACTG 104793213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413124909440500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |