Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq139997 87.8 2e-12 seq166039 86.0 5e-12 >seq139997 Length=61081816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 9479407 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 9479466 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || ||| || ||| ||| || || | | Sbjct 9479467 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACATT 9479526 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || || | |||||| |||| ||||| | || || ||||| || || || Sbjct 9479527 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 9479586 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 9479587 GAAGATTTGCATTTTGAC 9479604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| |||||| || || || ||||| | ||| || || | || || Sbjct 9478706 ACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 9478765 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||||||||| || || | ||||||||| | || | || ||||| || | Sbjct 9478766 AGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGG 9478825 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | | || || || | |||||| |||| ||||| | || Sbjct 9478826 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 9478885 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 9478886 CCGGTCAGGGTCTTCACGAAGATCTGCAT 9478914 >seq166039 Length=127282370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || | ||| || | | || || || | || || ||||||||||||||||| Sbjct 110596394 TCTTTCTGGAGATTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAA 110596453 Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||||| |||||| |||| ||| ||||| |||||| ||||| | Sbjct 110596454 ATTAGACGCTGCTGGTGAGGTGGG-ACGCCCTCCTTGTCTTGGATTTTGGTTTTGACATT 110596512 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || || | || || | | |||||| | || ||| |||| | || || Sbjct 110596513 CTCAGTGGTGTCACTGGGCTTGACCTGGAGGGTGATAGTCTTACCCATCAGAGGCTTCAC 110596572 Query 39273 AAAGATTTGCATCT 39286 |||||| ||||||| Sbjct 110596573 AAAGATCTGCATCT 110596586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428144559841625