Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq130414 158 1e-33 seq52188 91.5 1e-13 seq1 87.8 1e-12 >seq130414 Length=94101111 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 42658826 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGT 42658885 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| |||||||||||||| |||||||| || || || || | | Sbjct 42658886 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACC 42658945 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||||| |||||||| ||| Sbjct 42658946 ACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCATCAGA 42658990 >seq52188 Length=152998503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || || || || |||| || | ||||| | | |||| |||||| | ||| || ||| Sbjct 51604006 TCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTTGATTCTTCTTGGGAATAGAG 51603947 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409 ||||| ||||| |||||||| ||||||| ||||| |||||| | || || || | | Sbjct 51603946 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGATGAGGTTGTG 51603887 Query 114410 GTCAAGGCTCGAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCT 114469 |||| | | || | || || || || | || ||| |||| ||||| || Sbjct 51603886 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAG------CGGCGGCCAGGGCAGGTCC 51603833 Query 114470 CCGTTGTTCCCGATGCCCATG-TCTGGACACGCTGCCACGATACCGTTCAG 114519 || || || |||||||||||| ||||| || | || ||||||| ||| || Sbjct 51603832 CCATTCTTGCCGATGCCCATGTTCTGG-GACACAGCGACGATACAGTTTAG 51603783 >seq1 Length=240380223 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 144852705 TTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 144852764 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || |||||||| |||||||||||||| ||||||| ||||| |||||| Sbjct 144852765 ATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 144852812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404838425740750