Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq166039 109 5e-19 seq159875 96.9 3e-15 seq24225 89.7 4e-13 >seq166039 Length=127282370 Score = 109 bits (120), Expect = 5e-19 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| || ||||| || || | ||||| ||||||| ||| || |||| Sbjct 53771590 AGCCCTCGTGAAAATAGACATTCAGATAGCTCTTCCTTCTGGGTGCTGTGGAAGAGTAGC 53771649 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| || ||||| ||||| | |||||||| || || || || || || || |||||| Sbjct 53771650 TCCCAGTTCTGGCTTGGCTGCGAAACACTTCATAGATGTAGGAGCTGGCGTCATAGATGA 53771709 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||||| ||| || || |||| | ||||||||||| |||||| | | || Sbjct 53771710 AGATTATAGACTAAATGTGGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 53771768 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | | || || || ||||| ||| Sbjct 53771769 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAA 53771806 >seq159875 Length=83953389 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || ||||| || || || || |||||||||||||||||||| || Sbjct 48403586 ACAAAAACCTT--ACCAAATTTTCATTCACAATGCCATCACTGGCTGCAAAAAACGCTAA 48403643 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| ||||| |||| || |||| ||||| || |||||||| || | ||| || Sbjct 48403644 TATGTGAGAGATAAAATACTTCTCATCAGATTTAAGCTTGTTCCAGTGAGGGAGATCCTT 48403703 Query 5039 AGTTAAATCAAC 5050 | ||| ||||| Sbjct 48403704 TGATAAGTCAAC 48403715 >seq24225 Length=140925898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 133421816 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 133421875 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | || || || ||||||||||| || ||||| || |||||||| || Sbjct 133421876 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCC 133421935 Query 4692 AC 4693 || Sbjct 133421936 AC 133421937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425656700994125