Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq113784 120 4e-22 seq24225 116 5e-21 seq159875 87.8 2e-12 seq166039 84.2 3e-11 >seq113784 Length=115468741 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 60430490 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 60430431 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||| || || | ||| | ||||||| Sbjct 60430430 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 60430371 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 60430370 ATATGCTGTGGTCTTTCAGCC 60430350 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 60431930 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 60431871 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || |||||| || || | ||| | ||||||| Sbjct 60431870 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 60431811 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 60431810 ATATGCTGTGGTCTTTCAGCC 60431790 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 60448999 TGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCGATGGAC 60448940 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 60448939 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 60448880 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 60448879 TTTCTTATACCAT 60448867 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || |||| || | ||| Sbjct 60438781 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 60438722 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | ||| || ||||||| || Sbjct 60438721 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCAAGGC 60438662 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || ||||| || || | | |||||||| Sbjct 60438661 TCCAGATAAATAGCAAATGCCCCAGGTCG 60438633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| || Sbjct 60439478 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 60439419 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 60439418 CATCAAAGACCAGTC 60439404 >seq24225 Length=140925898 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 133421816 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 133421875 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 133421876 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 133421934 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 133420302 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 133420361 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| |||||||||| ||| ||||| || Sbjct 133420362 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGTGAAATATTCTC 133420421 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 133420422 CATAAAGTCAAATGGATT 133420439 >seq159875 Length=83953389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || ||||||| ||| ||||||||||| ||||| || ||| Sbjct 48408050 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 48408109 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||| |||||||| || || ||||||| Sbjct 48408110 GTACTGGATTGGAAAGATGACAAATC 48408135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||| || | || |||||||| || ||||| ||||| |||||||| || || ||||| Sbjct 48385427 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 48385486 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAA 47943 |||||||||||| ||||| |||| | | ||| Sbjct 48385487 CATAAAATCAAAGGGATTTTCTGCCTGAAAAA 48385518 >seq166039 Length=127282370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 45904 CTTTCAGTACCATCTAGAGATTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAG 45963 |||||||| |||| | | || ||||||| | || |||| | | || | || | | Sbjct 53771859 CTTTCAGTGTCATCCAAAACCTGAACTTCCTCTATTTCTGGATCAAAAATCCATTCACAA 53771800 Query 45964 ATTAGTTGAGCTATTCTATCACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATC 46023 || || || || |||| ||||||| | || | |||||| | ||||| ||| ||| | Sbjct 53771799 ATGAGCTGTGCAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAAT 53771740 Query 46024 AGAATGACTCCAATTGTCCCTCTATAATCTTCATCTATTACTCCCCCTCCCACATCGAT- 46082 || | || || | | |||||||||||||||||| || || |||| ||||| || Sbjct 53771739 AGTACAACACCCACATTTAGTCTATAATCTTCATCTATGACGCCAGCTCCTACATCTATG 53771680 Query 46083 -ACCTTTTAG-AGACAGTCCAGATCTAGGAGCTATTCTTCCA 46122 | ||| | || || ||||| || ||||||| ||||||| Sbjct 53771679 AAGTGTTTCGCAGCCAAGCCAGAACTGGGAGCTACTCTTCCA 53771638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692344915780000