Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5752 284 9e-72 seq8814 223 2e-53 seq9870 168 5e-37 seq3637 129 4e-25 >seq5752 Length=258549 Score = 284 bits (314), Expect = 9e-72 Identities = 329/441 (75%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATT 4028 ||||| | | || || ||||||||||||||||||||||| |||||| || || ||| Sbjct 13782 TTAATTACTTTTTTCTTATACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGACA-- 13839 Query 4029 AGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAA 4088 ||| |||||| |||| ||||| | |||||| || || || | |||| |||| |||| Sbjct 13840 -GAAGGAACACCTGGAGATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAA 13898 Query 4089 AAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148 ||| || |||| |||||| |||||||| | | |||||| | | |||||| || ||| Sbjct 13899 AAATGTATCACTTTCAAATTCTTGCATTTTT---GCCACAAATAATCTAAGATGGCCTGG 13955 Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 | |||| ||||| ||||| | ||||| ||| ||| || |||||||||| ||| Sbjct 13956 CTTGTTCATGGCTTCCTTATATA--GAACTGTTTCCTGCTATTCAAACCATGTCTAGTTT 14013 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 ||||| |||| |||| || || |||||| ||| ||||||| | ||| || || | ||| Sbjct 14014 ATTTGTTAATGCTGGTTGCACGATAAGTTCTAAGGCATCATGCAGACTTTTGGCAAGAAA 14073 Query 4269 ATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328 |||||||| | |||| | ||| ||||| | |||||| | |||||||||| | || Sbjct 14074 ATGAGCTCCCTATGGAGGTAACTTGAGTTCTCTATTGAGAATTATATTAATTCTGTCGTT 14133 Query 4329 TAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATT 4388 ||||| | |||||||| ||||| ||| || ||||| ||||||||||||| ||||| Sbjct 14134 TAAAGATTGATTCTTCTCTGGAATGTTGAATCATGTCTTCCTACCCATAATCACCAAATT 14193 Query 4389 CTGTTTATCTGGTACAGAAGA 4409 |||||||| | ||| ||||| Sbjct 14194 CTGTTTATATTCTACTGAAGA 14214 >seq8814 Length=891778 Score = 223 bits (246), Expect = 2e-53 Identities = 195/243 (80%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 3969 TTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATT 4028 ||||| ||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 339927 TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGAATATC 339868 Query 4029 AGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAA 4088 |||| ||| | |||||||||| | |||||| ||||| || | ||||| ||||||||| Sbjct 339867 AGAAGGAATAACTGGATATTCTGGGAGAAGTTTATATTTTTCCAAATCAATTTCTGGAAA 339808 Query 4089 AAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGG 4148 ||| ||||||| |||||| |||||| ||||||| |||||||| ||| |||||| || ||| Sbjct 339807 AAATGTGTCACTTTCAAATTCTTGCGTGATCCTTGTCACAAATAGTCTAAGATGGCCTGG 339748 Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 | | || | ||| || | |||||||| ||||| | |||||| |||||||||||||| Sbjct 339747 CTTGTTTATGGATTCCTTGCAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTT 339688 Query 4209 ATT 4211 ||| Sbjct 339687 ATT 339685 >seq9870 Length=863783 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 606204 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 606145 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 606144 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGTAGGACCAG 606085 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 606084 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 606025 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 606024 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 605965 Query 27167 ATTGCG 27172 |||||| Sbjct 605964 ATTGCG 605959 >seq3637 Length=615562 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 201202 TTATAAACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 201143 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 201142 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGA 201083 Query 4285 AGCTCC 4290 | ||| Sbjct 201082 GGTTCC 201077 Score = 125 bits (138), Expect = 5e-24 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 195981 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 195922 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 195921 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 195873 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| || |||| |||||| |||||||| Sbjct 203535 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCAT 203476 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| || ||| || ||| | |||| ||||| || | | ||| Sbjct 203475 GATCCTTGTCACAAATAGTCTATGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 203416 Query 4176 AC 4177 || Sbjct 203415 AC 203414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358991810476427