Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq52311 208 9e-49 seq8207 134 2e-26 seq197 123 3e-23 seq4890 102 1e-16 seq297100 93.3 5e-14 >seq52311 Length=1231 Score = 208 bits (230), Expect = 9e-49 Identities = 620/949 (65%), Gaps = 18/949 (2%) Strand=Plus/Minus Query 53702 AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 53761 ||||| | ||||| | |||||| || |||| |||| || | | |||||| ||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 53762 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 ||| || | |||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || ||||| ||||| | || |||| || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 53882 TTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT-ATAGTGT 53940 ||| | | || | || | ||| || | || || |||| | ||| ||| Sbjct 1005 AACCATAATTTTTGTGC---TGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATTGT 949 Query 53941 --ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||| ||| ||||| || |||||||| || | | ||||| ||||||||| ||| Sbjct 948 TCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGA 889 Query 53999 CACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCA 54057 ||||| || | ||| | | | | |||| |||| ||||||||| | ||| || ||||| Sbjct 888 CACATTAATGTCCATTGTTTAT-TTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCA 830 Query 54058 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 54117 | || ||||| |||||| | ||| || || | || ||| ||| | | ||| Sbjct 829 TAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATC 770 Query 54118 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 | | | ||||| | |||||| ||||| || ||||| | || | | || Sbjct 769 TAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTG---CAAATGAA--CCC 715 Query 54178 TTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 ||| ||| ||||| || |||| || | || || |||| | | | | |||||| Sbjct 714 TTTCTTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATT 655 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292 || | || ||||| ||| ||||| || || ||||| |||||| || | ||| Sbjct 654 GGTACTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATT 595 Query 54293 TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 54352 ||| ||| |||| || || || ||||| ||| || ||||| ||| ||||||| Sbjct 594 TTATGAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAAT 535 Query 54353 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 54412 || || | || || |||| |||||| ||| | | || |||||| |||||| Sbjct 534 GTTGCAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATT 475 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 || || | || || | ||||||||| || || | || || ||||| || ||| | Sbjct 474 TGTGGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGA 415 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 | || ||| || || | || | | |||| || | ||| ||||| || Sbjct 414 CTCATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGAT 355 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 || | ||||||||| || || |||||||| | || || |||| | | | || || Sbjct 354 ACTCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATAT 295 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 ||| |||| || |||||||| |||||||| | ||| ||| |||| || Sbjct 294 GATCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq8207 Length=439286 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 388124 CTGTTTCTTATACCATA 388108 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | || || ||||| ||||| || || || | Sbjct 363040 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGA 362981 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| | || || | || ||| |||| Sbjct 362980 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 362921 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 362920 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 362875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 377335 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 377276 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 377275 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 377216 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 377215 AGGTTCCAGGTAAAT 377201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 383750 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 383691 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 383690 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 383631 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 383630 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 383571 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 383570 GTTTATTCGA 383561 >seq197 Length=217379 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 24277 C 24277 | Sbjct 121401 C 121401 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq4890 Length=280387 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 127765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 118601 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 118542 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 118541 TACTGGATTGGAAAGATGACAAATC 118517 >seq297100 Length=295 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 ||||| ||||| || |||| | |||| ||||| |||||| | ||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 ||||| | |||||| | || |||||||||||||| | || ||||||||| ||||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 24474 CATCT-AGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 | ||| ||| || | || || || ||| || |||| |||||||||||| || Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAAC 233 Query 24533 TATTCCGTCACTG 24545 |||||||||||| Sbjct 234 AATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589913046630960