Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5279 268 1e-66 seq12543 104 3e-17 seq14123 102 1e-16 >seq5279 Length=634058 Score = 268 bits (296), Expect = 1e-66 Identities = 262/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| | ||| | | | | |||| | ||||| |||||||||||||| Sbjct 95365 AGCAGGGTTTCTATGTCAGACTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 95306 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 95305 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 95246 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || |||||| ||| || |||||| ||| ||| | | |||||| ||| Sbjct 95245 CACACCGGGGACCAGATGATGGACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTA 95186 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| || | | || || || Sbjct 95185 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGCGCGTTCTCGCCATTCACT 95126 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| || |||||||| ||||| ||||| || ||| || || ||||||| |||| Sbjct 95125 TCGCACTTTTCAAAGAGCATGAAGTTGGGCTCAAACCCGCCGCCTGGTCGGACGTACTTC 95066 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 95065 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 95028 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| || ||||| || ||||| |||| ||||| | ||| |||| Sbjct 94767 CCTGATGCCCAAACTGGTTGCAAGGGAAGCCGAGCACGACCAAGCCCCGGGGTCCGAGGC 94708 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 94707 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 94648 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 94647 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 94588 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||| || ||||| |||||||| Sbjct 94587 CCAGAAGGCGCGCGGAGAAAGCGTACAC 94560 >seq12543 Length=407512 Score = 104 bits (114), Expect = 3e-17 Identities = 202/288 (70%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| || |||||| || ||| ||| Sbjct 383780 GCAGCTGCGCAGCATCTATGAGAGCA-GCTTGTCCATTGGCAACTTTGCCTCGCGCCTGC 383722 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 383721 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 383662 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| || | | |||| ||||| Sbjct 383661 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTTCCCGTATCAAGCTCATCCGCCACTAC 383603 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 383602 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 383544 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 383543 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 383498 >seq14123 Length=210818 Score = 102 bits (112), Expect = 1e-16 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||| |||| || | |||||||| | | |||||||| | ||||| |||||||||||||| Sbjct 82540 AGCGGGGCTTCTGTATCGGGCTCGATGTCCAGGGTCAGAAAGCGGCGGCTGTACCTGCGC 82481 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| | ||| | |||| || || |||| | |||| | | ||| | ||| ||| Sbjct 82480 AAGGGCCCACTGTCCGGGCCCAACAGGAGCTTCCCTGAAGCTGCGGGCGAAGTCCCTGCT 82421 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 |||||| ||| |||||| |||| | ||| || ||||||| | | | || | || Sbjct 82420 GCACACCGGACACCAGGGTATGAACCCGGGATCCTTCACGAGGGCCGTGGCGGCGCCACT 82361 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC 83281 ||| |||||||||| | ||| ||| |||||| | || ||| Sbjct 82360 GGGCATGCGCAGGGCCTCGCCAAGGCCGGCAAAGAGCCGGTGCGCC 82315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604891543557080