Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11610 131 1e-25 seq17057 122 7e-23 seq512960 87.8 2e-12 seq13283 87.8 2e-12 >seq11610 Length=252271 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 43327 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43386 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| |||||| | || | ||||||||||| ||| Sbjct 43387 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43446 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| ||||||| Sbjct 43447 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 43506 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 43507 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||| ||||| || || ||||| ||||| | |||||| | | || Sbjct 43114 AGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 43173 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| |||||| | || | ||||||||||| ||| | ||| |||||||| Sbjct 43174 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 43233 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 43234 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 43293 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || || || || ||||| Sbjct 43294 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 43555 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43614 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||||||||| ||| | || | ||||||||||| || Sbjct 43615 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 43674 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| || || | ||| || |||| |||||| Sbjct 43675 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 43734 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || || || | ||||| ||||| || |||||| Sbjct 43735 TCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq17057 Length=148899 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 117206 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 117147 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || | ||||||||| ||| | ||||||||| || Sbjct 117146 TCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 117087 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 117086 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 117027 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || || || ||||||||||||| Sbjct 117026 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 116990 >seq512960 Length=5958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| ||||||||||||||||||||||| ||||| | | Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4495 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || | ||| || ||||| ||| | || ||||| |||||||| | || Sbjct 4494 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 4435 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| | |||||| || || | | | ||||| ||||| Sbjct 4434 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 4375 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || ||||| || ||||| ||| Sbjct 4374 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 4324 >seq13283 Length=25003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| ||||||||||||||||||||||| ||||| | | Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7190 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || | ||| || ||||| ||| | || ||||| |||||||| | || Sbjct 7189 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 7130 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| | |||||| || || | | | ||||| ||||| Sbjct 7129 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 7070 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || ||||| || ||||| ||| Sbjct 7069 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 7019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419618245415732