Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11610 140 3e-28 seq17057 132 5e-26 seq2312 95.1 1e-14 seq34337 91.5 2e-13 seq332959 89.7 5e-13 seq2274 84.2 2e-11 seq197 84.2 2e-11 >seq11610 Length=252271 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 43325 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 43266 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 43265 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 43206 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||||| ||||||||||| || | ||||||||| ||||||||| Sbjct 43205 CAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 43146 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || ||||| | || ||||||||||||| || Sbjct 43145 ATCCAGAAAGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 43099 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 43553 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 43494 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 43493 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 43434 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||||| ||||||||||| || | ||||||||| ||||||||| Sbjct 43433 CAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 43374 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 43373 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 43327 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || |||||||| || || || ||||||||||| | || || || | | Sbjct 43782 AATGCAGATCTTTGTAAAAACCCTGACTGGTAAAACCATCACTCTGGAGGTGGAGCCTAG 43723 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | || ||||| |||||||| | ||||| Sbjct 43722 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCA 43663 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || |||||||||||||| || | ||||||||| |||||||| Sbjct 43662 GCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43603 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 43602 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 43555 >seq17057 Length=148899 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 116992 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 117051 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 117052 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 117110 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || ||||| |||||||| || | ||||| || || || Sbjct 117111 CCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 117170 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 117171 CAACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 117222 >seq2312 Length=925560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || || || |||||||| |||| || || || Sbjct 16415 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCC 16474 Query 40747 ACCGA--CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || || | | ||| | | |||| ||||| | || || || || || || | Sbjct 16475 TCGGATACAACA-GAAAATG-TAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTT 16532 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||| |||| |||| || ||||| || ||||| || | || || | |||| Sbjct 16533 ACCAGCAAAGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACT 16592 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||| || |||||| |||| || |||||||||||| Sbjct 16593 ACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 16630 >seq34337 Length=37708 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||| ||| | |||||||| || ||||||| || ||||| |||||||| Sbjct 26 GATAAGGAAGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAGCTGGAA 85 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| | || ||||| || || | Sbjct 86 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTT 145 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 146 CGTCTGAGGGGTGGC 160 >seq332959 Length=315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||| ||| | |||||||| || ||||||| || ||||| |||||||| Sbjct 268 GATAAGGAAGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAA 209 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| | || ||||| || || | Sbjct 208 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTC 149 Query 40903 CGCTTGAGGGGCGG 40916 || ||||||| || Sbjct 148 CGTCTGAGGGGTGG 135 >seq2274 Length=301413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||| ||||||||||| |||| ||| | || Sbjct 270662 AAGATGCAGATTTTTGTGAAGACCCTGACGAAGAAAACCATCACTCTCGAGGTCAAGCCC 270603 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || | | ||| | |||| || || | || ||||| || || || | ||| Sbjct 270602 TAGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 270543 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| |||| | ||||| || ||||| || | | || | |||||| Sbjct 270542 CAGCAAAGACTGATCTTTCCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 270483 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || |||||||||||| Sbjct 270482 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 270447 >seq197 Length=217379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| |||||||||| || ||| || | ||||| | Sbjct 121396 TGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 121455 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||||| || || ||||| ||||| || || ||| || || || ||| | Sbjct 121456 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 121515 Query 117162 ACGAGG 117167 |||||| Sbjct 121516 ACGAGG 121521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511914216957520