Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17057 109 6e-19 seq3169 102 9e-17 seq11610 100 3e-16 seq6772 100 3e-16 seq4622 98.7 1e-15 seq753 98.7 1e-15 seq5999 89.7 6e-13 seq3119 87.8 2e-12 seq491727 84.2 2e-11 seq17440 84.2 2e-11 seq6714 84.2 2e-11 seq286272 82.4 9e-11 seq4670 82.4 9e-11 >seq17057 Length=148899 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 117186 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 117127 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||||| ||| ||| || || | | Sbjct 117126 GATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 117067 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 117066 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 117007 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 117006 GAAGATTTGCATTTTGAC 116989 >seq3169 Length=148348 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 128376 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128435 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 128436 TACTAACGAGGAGTGA 128451 >seq11610 Length=252271 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 57703 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 57762 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 57763 TACTAACGAGGAT 57775 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 54765 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 54824 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 54825 TACTAACGAGGA 54836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 43555 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43614 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 43615 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 43674 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || || ||| || |||| || | | ||||| || | ||||| Sbjct 43675 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 43734 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || || ||||||||||| |||||| Sbjct 43735 TCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq6772 Length=255489 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 27124 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 27065 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 27064 ATACTAACGAGGA 27052 >seq4622 Length=626524 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 99818 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 99759 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 99758 TACTAACGAGGA 99747 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||||||||||||||| || ||||||||||||| Sbjct 152866 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTA 152925 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 152926 TACTAACGAGGA 152937 >seq753 Length=255856 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 69266 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 69207 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 69206 TACTAACGAGGA 69195 >seq5999 Length=734475 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 28750 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 28691 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 28690 TACTAACGAGGA 28679 >seq3119 Length=342776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||||||||||| |||||||||| || ||||||||||||| Sbjct 324215 CTCCCCGTCGGGGAATCGAACCCTGGTCTCCAGCGTGACAGGAGGGGATACTCACCACTA 324274 Query 60126 TACTACCGAGGAT 60138 || || |||||| Sbjct 324275 TATTAATGAGGAT 324287 >seq491727 Length=917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 412 GAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTATACTAACGAGGA 353 Query 60138 T 60138 | Sbjct 352 T 352 >seq17440 Length=19628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 15226 GAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCGCCACTATACTAACGAGGA 15167 Query 60138 T 60138 | Sbjct 15166 T 15166 >seq6714 Length=597183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133 ||||||||| || | ||||||||||||||||||||| |||||||||||||||||| || Sbjct 409856 CAGGGAATCCAAATCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACG 409797 Query 60134 AGGA 60137 |||| Sbjct 409796 AGGA 409793 >seq286272 Length=290 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct 199 GGGAATCGAACCCTGGTCTCCAGCGTGGCAGGCAGGGATACTCACCACTATACTAAAGAG 258 Query 60136 GAT 60138 ||| Sbjct 259 GAT 261 >seq4670 Length=68337 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct 62821 GGGAATCGAACCCTGGTCTCCAGCGTGGCAGGCAGGGATACTCACCACTATACTAAAGAG 62880 Query 60136 GAT 60138 ||| Sbjct 62881 GAT 62883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568149554493560