Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq311227 111 2e-19 seq2656 93.3 6e-14 seq59220 89.7 8e-13 seq2274 84.2 3e-11 >seq311227 Length=303 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| ||||||||||| ||||| | ||| |||||| ||||| || || Sbjct 214 TTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGC 155 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || ||||| | ||| ||||| ||||| |||||||| || || | ||||||||| || | Sbjct 154 TCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTG 95 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 94 GAATTCCTTCCTTATCTTG 76 >seq2656 Length=305558 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | ||| || || ||| || ||||| || || || Sbjct 78851 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCAGA 78793 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| |||| ||| || |||||||| |||| ||||||||| || ||||| Sbjct 78792 CAAAGTACATCCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 78733 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 78732 AATTCCTTCCTTATCCTG 78715 >seq59220 Length=24887 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 15074 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGA-ATGTTGTAGTCAGA 15016 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||| || ||||| Sbjct 15015 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGG 14956 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 14955 AATTCCTTCTTTATCCTG 14938 >seq2274 Length=301413 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 270491 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | ||| || | ||| || |||| ||| |||| ||||||||| || ||||| Sbjct 270492 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGG 270551 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 270552 AATTCCTTCTTTATCCTG 270569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738756891907840