Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8804 107 2e-18 seq197 107 2e-18 seq4890 105 6e-18 >seq8804 Length=425942 Score = 107 bits (118), Expect = 2e-18 Identities = 283/429 (66%), Gaps = 6/429 (1%) Strand=Plus/Minus Query 133464 TTATAGGTTTATAATTATCGATCGTTTGGGTTGTGATCTTCAAAGAATAATTCAAGCTAA 133523 |||||||||||| || || |||| || || |||| ||||| | |||| | |||| || Sbjct 107012 TTATAGGTTTATGATAATAGATCACTTTGGGAGTGACCTTCAGAAAATATATGAAGCAAA 106953 Query 133524 TGATAACAAACTTCCTaaaaaaaCTGTTTTAAAAATAGGAGCT--ATAATTTTGGTTATT 133581 || || | | || || | |||||||| || | || |||| | |||| ||| |||| Sbjct 106952 TGCCAAAAGATTTTCTCAGAAAACTGTCTTGCAGCTA--AGCTTAAGAATTCTGGATATT 106895 Query 133582 TTAAAATTTATTCACGACAACGGGTACGTACATAGCGATATAAAGGCTTCTAATATAGCT 133641 | ||| |||||| || | | ||| ||||| | ||||| ||||| || ||| | | Sbjct 106894 CTGGAATATATTCATGAGCATGAGTATGTACACGGAGATATCAAGGCCTCAAATCTTCTT 106835 Query 133642 CTTGACAAAAACGATAAAAACAAACTTTATTTAATAGATTACGGATTAGCATTTAGGTTT 133701 || | | || || || | | || || |||| || || | || | | | | Sbjct 106834 CTCAGCTACAAGAATCCTGACCAGGTGTACTTGGTAGACTATGGCCTTGCTTATCGAT-- 106777 Query 133702 ATGGTAAACGATATACACGTTGAATTTAAAAAAGATCCAAAAAGAATGCATAACGGAACA 133761 | | | | || | |||| ||| |||| || |||||| ||| | || ||| Sbjct 106776 ACTGCCCAGAAGGGACTCAAAGAATACAAAGAAGACCCCAAAAGATGTCATGATGGCACA 106717 Query 133762 ATAGAATTTACAAGCATAGATGCGCATTGCGGAGCATATCCTTCTAGAAGAGGAGACCTT 133821 || ||||| || ||||| |||||||| ||| | || || ||| | || ||| | Sbjct 106716 ATTGAATTCACCAGCATCGATGCGCACAACGGTGTGGCCCCATCAAGATGCGGTGACTTG 106657 Query 133822 GAAATTTTAGGATATTGTATGATAAAGTGGATGAGTGGTAAATTACCATGGGAGGACGAT 133881 ||||| | |||||||| ||||| ||||| | ||||| | | ||||||||||| || Sbjct 106656 GAAATCCTTGGATATTGCATGATCCAGTGGCTTAGTGGCCATCTGCCATGGGAGGATAAT 106597 Query 133882 TTAAAAAAT 133890 || ||| || Sbjct 106596 TTGAAAGAT 106588 >seq197 Length=217379 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 121519 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 121460 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 121459 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 121400 Query 16379 ACCA 16382 |||| Sbjct 121399 ACCA 121396 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| || | |||||||| |||||||| || || || | Sbjct 123088 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 123029 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || | |||||||||||||||||| ||||| ||||||| Sbjct 123028 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 122990 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| |||||||| || || | |||||||||||| ||||| || | Sbjct 119567 TTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 119508 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | ||||||| || || ||||| Sbjct 119507 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 119453 >seq4890 Length=280387 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 141516 TTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACG 141457 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||| Sbjct 141456 CTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTC 141397 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||||||||| ||||||| || Sbjct 141396 CATAAAATCAAAGGGATTTTCTG 141374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459545118492200