Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq17057 91.5 1e-13 seq11610 86.0 5e-12 seq59220 84.2 2e-11 seq512960 82.4 6e-11 seq13283 82.4 6e-11 >seq17057 Length=148899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || || ||||| || |||||||| || | Sbjct 117221 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 117162 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || | || || || ||| Sbjct 117161 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 117102 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | | | ||||||| |||||| Sbjct 117101 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 117042 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | |||||||||| || || || || ||||||||||| Sbjct 117041 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 116992 >seq11610 Length=252271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 43114 AGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 43173 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| |||||| |||| | || || || || ||| | ||| ||||| || Sbjct 43174 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 43233 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 43234 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 43293 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || || || || ||||| Sbjct 43294 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 43342 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 43401 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| |||||| |||| | || || || || ||| | ||| ||||| || Sbjct 43402 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 43461 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 43462 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 43521 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || || || || ||||| Sbjct 43522 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 43570 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 43629 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| | || || || || || | |||||| || || Sbjct 43630 TCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCT 43689 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| ||||| || | |||||| || Sbjct 43690 TGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTT 43749 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| ||||||||||| || |||||| Sbjct 43750 TTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq59220 Length=24887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || || | Sbjct 15097 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACT 15038 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 15037 CATTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 14978 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| | || || | ||||| ||||| || | ||| || | | Sbjct 14977 TCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTT 14918 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||||||| || | |||||| | || || |||| || || |||| Sbjct 14917 CTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAA 14858 Query 18316 AAATTTGCATTTT 18328 |||| ||||| || Sbjct 14857 AAATCTGCATCTT 14845 >seq512960 Length=5958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | |||| || || || |||||| Sbjct 4569 TTCCTTTTCTTAGCGCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA 4510 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | ||||| || ||| ||||| ||| |||| |||||| Sbjct 4509 ATGTTGTAGTCAGACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTT 4450 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTA-TCGGCAATTTGTTGCTTGACCTGTGCAACAGT 18262 || || || | || | ||||||||| || | | ||| ||| || | | | | || Sbjct 4449 TGCTGGTCAAGAGGAATTCCTTCCTTATTCTGGATCTTG-GCCTTTACATTTTCTATGGT 4391 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 || ||||| | || | |||||| | || || |||| || || |||||||| || Sbjct 4390 ATCTGAGGGCTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTG 4331 Query 18323 CATTTT 18328 ||| || Sbjct 4330 CATCTT 4325 >seq13283 Length=25003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | |||| || || || |||||| Sbjct 7264 TTCCTTTTCTTAGCGCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA 7205 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | ||||| || ||| ||||| ||| |||| |||||| Sbjct 7204 ATGTTGTAGTCAGACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTT 7145 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTA-TCGGCAATTTGTTGCTTGACCTGTGCAACAGT 18262 || || || | || | ||||||||| || | | ||| ||| || | | | | || Sbjct 7144 TGCTGGTCAAGAGGAATTCCTTCCTTATTCTGGATCTTG-GCCTTTACATTTTCTATGGT 7086 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 || ||||| | || | |||||| | || || |||| || || |||||||| || Sbjct 7085 ATCTGAGGGCTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTG 7026 Query 18323 CATTTT 18328 ||| || Sbjct 7025 CATCTT 7020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376971451868865