Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8207 125 6e-24 seq17057 111 1e-19 seq2312 96.9 3e-15 seq332959 86.0 6e-12 seq34337 86.0 6e-12 seq101 82.4 7e-11 >seq8207 Length=439286 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| || ||||| || || || || Sbjct 380581 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTT 380522 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||| Sbjct 380521 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 380462 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 380461 CCTGTCTCTGTCTGAGACTCAATGATGGC 380433 >seq17057 Length=148899 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 116990 TCAAA-ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 117048 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | || || | || ||| ||||||||| | || || Sbjct 117049 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 117108 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||||| || || || || ||||| ||| ||||||| ||| | ||| Sbjct 117109 GACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 117168 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| || || || || ||||| ||| | |||||||| || Sbjct 117169 TACAACATCCAGAAAGAGTCTACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 117221 >seq2312 Length=925560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||||||| || || ||||| |||| || || || Sbjct 16415 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCC 16474 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | ||| ||| |||||||| | || | || Sbjct 16475 TCGGATACAACAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTTAC 16534 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 16535 CAGCAAAGACTGATCTTAGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 16593 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 16594 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 16635 >seq332959 Length=315 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| ||||||||| | || || ||||||||||| || || || || ||||| ||| |||| Sbjct 269 GGATAAGGAAGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGA 210 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 209 AGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCT 150 Query 31405 TAGACTGAGGGGCGGTA 31421 | |||||||| |||| Sbjct 149 CCGTCTGAGGGGTGGTA 133 >seq34337 Length=37708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| ||||||||| | || || ||||||||||| || || || |||||||| ||| |||| Sbjct 25 GGATAAGGAAGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAGCTGGA 84 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||| ||||| || ||||| || || || || ||||| || Sbjct 85 AGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTCCT 144 Query 31405 TAGACTGAGGGGCGG 31419 | | |||||||| || Sbjct 145 TCGTCTGAGGGGTGG 159 >seq101 Length=221765 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| || || || |||| || | ||||| || Sbjct 70808 AAGATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTTGAGCCC 70749 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | |||| || || | || ||| |||||||| | || || ||| Sbjct 70748 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCTGAC 70689 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | ||| ||| || || || Sbjct 70688 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 70630 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 70629 CAACATTCAAAAGGAGCCCACTCTTCATCTAGTGTTGAGACT 70588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442906936701840