Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq52311 235 7e-57 seq17419 172 7e-38 seq8207 131 2e-25 seq197 114 2e-20 seq8814 107 2e-18 seq4890 98.7 1e-15 seq297100 93.3 5e-14 >seq52311 Length=1231 Score = 235 bits (260), Expect = 7e-57 Identities = 626/949 (66%), Gaps = 18/949 (2%) Strand=Plus/Minus Query 62940 AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62999 ||||| || ||||| | |||||| || |||| |||| || | | |||||| ||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 63000 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63059 ||| || | |||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 63060 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 || ||||| ||||| | || |||| || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 63120 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGT-ATAGAGT 63178 ||| | | | || | || | ||| || | || || |||| | ||| || Sbjct 1005 AACCATAATTTTTGTGC---TGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATTGT 949 Query 63179 --ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 ||| ||| || || || |||||||| || | | |||| ||||||||| ||| Sbjct 948 TCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGA 889 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||| || | ||| | | | | |||| |||| ||||||||| | ||| || ||||| Sbjct 888 CACATTAATGTCCATTGTTTAT-TTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCA 830 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 | || ||||| |||||||| ||| || || | || ||| ||| | | ||| Sbjct 829 TAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATC 770 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | | | ||||| | |||||| ||||| || ||||| || || | | || Sbjct 769 TAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGC---AAATGAA--CCC 715 Query 63416 TTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 ||| ||| ||||| || |||| || | || || |||| | | | | |||||| Sbjct 714 TTTCTTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATT 655 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || | || || || ||||| ||||| || || ||||| |||||| || | ||| Sbjct 654 GGTACTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATT 595 Query 63531 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 ||| ||| |||| || ||||| ||||| ||| || ||||| ||| ||||||| Sbjct 594 TTATGAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAAT 535 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 || || | || ||||||| |||||| ||| | | || |||||| |||||| Sbjct 534 GTTGCAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATT 475 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || || | || || | ||||||||| || || | || || ||||| || ||| | Sbjct 474 TGTGGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGA 415 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 | || ||| || || | || | | |||| || | ||| ||||| || Sbjct 414 CTCATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGAT 355 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 || | ||||||||| || || |||||||| | ||||| |||| | | || || || Sbjct 354 ACTCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATAT 295 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| |||| || |||||||| |||||||| | ||| ||| |||| || Sbjct 294 GATCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq17419 Length=44627 Score = 172 bits (190), Expect = 7e-38 Identities = 209/286 (73%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||| || |||||||| |||||||||| |||||||| || | Sbjct 35633 GGATCTTTGGGTCTGATTTTAGCCATGACTTTAAACAGACATAAGCATCCCCTTAACCCA 35692 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 ||||| |||| || ||||| |||||| ||| |||| || |||||| ||||||||||| Sbjct 35693 TACCTGCTTTTTGTATTTATACTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 35752 Query 188498 TATGATG--------CGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTC 188549 | ||||| | ||| || | |||| ||| || |||| |||||| |||| Sbjct 35753 TGTGATGTATATATTGTCTTATTGTCTTGCAAGATTTTATACTGACCCATGCAGTATTTC 35812 Query 188550 TTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGAT 188609 || | ||| | |||||||||||| |||||||||| ||| || ||| | | || Sbjct 35813 CTGATTCAACTGTGTATACTCTACAATCTAAGAGAGATTACAGCAAGTTTGGAGCGGGCC 35872 Query 188610 TGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655 ||||| ||| ||| |||||||| ||||||||| |||||| ||| Sbjct 35873 TGTTTTCTGATTTGTGGATTTTGTGCTTGTCAGGAATCTTGAAGAT 35918 >seq8207 Length=439286 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 388124 CTGTTTCTTATACCATA 388108 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 383750 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 383691 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | || || || || || ||||| || | Sbjct 383690 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 383631 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 383630 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 383571 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 383570 GTTTATTCGA 383561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || || || || | | Sbjct 377335 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 377276 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 377275 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 377216 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 377215 AGGTTCCAGGTAAATAGC 377198 >seq197 Length=217379 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||| ||||| ||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 33724 C 33724 | Sbjct 121401 C 121401 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || ||||||||||| |||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq8814 Length=891778 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 854824 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 854765 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | |||| Sbjct 854764 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 854706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 866625 TGCTCATCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 866566 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 866565 ATCCGAATGG 866556 >seq4890 Length=280387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 127765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 118601 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 118542 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 118541 TACTGGATTGGAAAGATGACAAATC 118517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 123293 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 123234 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || || || |||| | | || || ||||| | | | ||| || |||| ||| || Sbjct 123233 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 123178 >seq297100 Length=295 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || |||||||| || |||| | |||| ||||| |||||| | |||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 ||||| | |||||| | || |||||||||||||| | || || |||||| ||||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 33921 CATCT-AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33979 | ||| ||| || | || || ||| ||| || |||| |||||||||||| || Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAAC 233 Query 33980 TATTCCATCACTG 33992 ||||| |||||| Sbjct 234 AATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625777501168560