Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq52311 425 5e-114 seq197 120 3e-22 seq4890 114 1e-20 seq297100 109 5e-19 seq8207 98.7 9e-16 >seq52311 Length=1231 Score = 425 bits (470), Expect = 5e-114 Identities = 693/993 (70%), Gaps = 10/993 (1%) Strand=Plus/Minus Query 37699 GATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAG 37758 ||| ||| ||||||||| || | |||||||| || ||||||||| || || ||| Sbjct 1176 GATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATTTCACAACAT 1117 Query 37759 AGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCT 37818 | |||||| ||| | |||||||| ||||| ||||||| |||| |||||| | |||| Sbjct 1116 AAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTACATGCATCT 1057 Query 37819 TTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAA 37878 ||||||| ||||| || |||||| ||||||||| | | | || | |||||| Sbjct 1056 TTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCAAACCATAAT 997 Query 37879 CTTCTTGCTTTAACGATCGCTTTAAtttt--tttCTTTGT-TTCGTATTCTATATATAAT 37935 || |||| || | |||| | || |||| | ||| |||| | ||||||| Sbjct 996 TTTTGTGCTGGTACTGT---TTTACGTCCCATTCCTTTTTCTTCATATTGTTCATATAAT 940 Query 37936 TTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGA 37995 || | ||| || | |||||||| || |||||||| |||||| ||||||||||| Sbjct 939 TTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGACACATTAAT 880 Query 37996 GACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA 38055 | ||||| || || | |||||| | || |||||||||||| |||| |||||||||| | Sbjct 879 GTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCATAATGCATAA 820 Query 38056 AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCG 38115 ||||||||| | | ||| | ||||| | || ||| |||||||| || || | Sbjct 819 AATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATCTAAAAGTTTA 760 Query 38116 AATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCT 38175 |||||||| || ||||||||||||| ||| || | | || || |||||| ||||| Sbjct 759 AATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTCTTTTTCCACCT 700 Query 38176 CCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTA 38235 || || | | ||| | | || |||| ||||| ||||||| |||||||| |||||| Sbjct 699 CCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGGTACTATTCCATTA 640 Query 38236 GATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT 38295 ||| | || || | || ||||| | || | |||| || ||| || || ||| Sbjct 639 GATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTTATGAATAGATAAT 580 Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || ||||| |||||| || ||| || || ||||||||||| || ||||||| ||| Sbjct 579 CCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGTTGCAAATATTCCT 520 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 |||| ||||| | || || || |||||| |||||||| || | || Sbjct 519 TCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATTTGTGGATTTTTTGTA 460 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT--AATTAT 38473 || | ||||||||||| || | ||||||| | || || ||| ||| || |||||| Sbjct 459 CCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTT--GACTCATTAAATTAT 402 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 |||||| |||| | |||| || || | || || || ||||| ||||||| || Sbjct 401 ATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGATACTCTCATTAACA 342 Query 38534 TATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATG 38593 ||||||||||||||||| |||||| ||| | | | || ||| ||| ||||||||| Sbjct 341 TATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATATGATCTTTCTAATG 282 Query 38594 TTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTATCGATTA 38653 |||| | |||||||||| |||| | ||||||| | || ||||| | | || | | Sbjct 281 TTTTAAATCCAAAATAATCATATTGAAAATCTCTTTTATAATCTATTGCTTGATTTAATT 222 Query 38654 TATCTCTATGTTTATTTACTTGTTGATATAGAT 38686 | ||| ||| || |||| || ||||| || Sbjct 221 TTTCTTTATTTTCTATTACAAATTTATATACAT 189 >seq197 Length=217379 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| ||||| || | || ||||||| ||||||||| || Sbjct 121519 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 121460 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 121459 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 121400 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 121399 ACCACACGTTCTCC 121386 >seq4890 Length=280387 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 127885 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 127826 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 127825 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 127766 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 127765 CCACCACCCTTTCCCC 127750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 124187 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCAATGAG 124128 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 124127 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACTTCC 124082 >seq297100 Length=295 Score = 109 bits (120), Expect = 5e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||||||| |||||| | || || |||| | ||||||||||| || | Sbjct 13 ATCCATTTCTTTGCCCAATTAGCTTTATCCTTCACTGCAT-CTATTGTTTCTATTGCCAT 71 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| || |||||| || | | |||| ||| ||| | ||||| ||||||||||| | Sbjct 72 AAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCTATCAATAAACTATATGT 131 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAAC 11969 || |||||||| ||||||| || ||||||||| ||||||| Sbjct 132 CTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAAC 175 >seq8207 Length=439286 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||| Sbjct 390471 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 390412 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACA-- 36980 ||| ||||| |||||||| || || |||||||| |||||||||| ||| | |||| Sbjct 390411 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCA--TCTTGAGTACAGT 390354 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010 ||| ||||| || ||||| || || ||||| Sbjct 390353 TTTCTGAGAGATTTCCCACACGGTCTTATA 390324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | ||| |||| || || ||||||||||| || || || || | Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 388124 CTGTTTCTTATACCAT 388109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465519348108880