Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3299 140 3e-28 >seq3299 Length=266545 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 77725 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 77666 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| ||||||||||||||| || Sbjct 77665 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATTCA 77606 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 77605 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 77546 Query 21169 GG 21170 || Sbjct 77545 GG 77544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || || || || | ||| || || Sbjct 75183 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAG 75124 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | || ||||||| | | |||| ||| | |||||||||| || |||||||||| Sbjct 75123 CTCTGTTGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 75064 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | |||||||| | | || |||||| ||| Sbjct 75063 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 75023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425100541446960